PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_009602075.1
Organism
Nicotiana tomentosiformis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana
Family bHLH
Protein Properties Length: 322aa    MW: 36029.4 Da    PI: 5.1143
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_009602075.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH33.19.8e-112482881055
                     HHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
             HLH  10 rrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 
                     r+RR+riN+++ +L++l+P+      +K++ +++Le+Av Y+k Lq
  XP_009602075.1 248 RKRRERINEKLKTLQSLIPNG-----TKVDISTMLEEAVLYVKFLQ 288
                     9******************97.....8******************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF474591.7E-13238304IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PROSITE profilePS5088815.008238287IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.104.2E-12243297IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003531.6E-11244293IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000831.26E-11247292No hitNo description
PfamPF000104.5E-8248288IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 322 aa     Download sequence    Send to blast
MEPVASISGE WSSFSGMCLI EEADFMAQLL GNCSLPNELP CSSNFGVSST YWTGHESTMN  60
MGEVPFYSSN DTNNSVYSGS CFPPRSHESY YSSHSRPILM RNDSSITTEY GVVEGQINPI  120
EADDFLNRDV SNDSMEYNEN MPEAVLDIGN GLQLGRRDNY EQFPEDKMDS SSESSKKRCR  180
LHGPGHVPKN KRSAKLEKGG INKVVLQRQN SMISCCSEDD SVNVSHELTR KTRASRGSAT  240
DPQSLYARKR RERINEKLKT LQSLIPNGTK VDISTMLEEA VLYVKFLQLQ IKLLSSDDLW  300
MYAPIAYNGM DLGLDLRIGI PK
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankHG9755224e-39HG975522.1 Solanum lycopersicum chromosome ch10, complete genome.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009602075.10.0PREDICTED: transcription factor bHLH84-like
RefseqXP_016435053.10.0PREDICTED: transcription factor bHLH84-like isoform X1
TrEMBLA0A1S3X5R60.0A0A1S3X5R6_TOBAC; transcription factor bHLH84-like isoform X1
STRINGXP_009602075.10.0(Nicotiana tomentosiformis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA63922101
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G14760.12e-52bHLH family protein