PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_009602074.1
Organism
Nicotiana tomentosiformis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana
Family bHLH
Protein Properties Length: 329aa    MW: 36721.8 Da    PI: 5.1184
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_009602074.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH34.63.3e-112552951055
                     HHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
             HLH  10 rrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 
                     r+RR+riN+++ +L++l+P+      +K++ +++Le+Av+Y+k Lq
  XP_009602074.1 255 RKRRERINERLRTLQTLIPNG-----TKVDISTMLEEAVQYVKFLQ 295
                     9******************97.....8******************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF474594.06E-14245310IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PROSITE profilePS5088815.44245294IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.101.5E-12250304IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003531.1E-11251300IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000835.42E-12254299No hitNo description
PfamPF000101.6E-8255295IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 329 aa     Download sequence    Send to blast
MTAGHTGEWS SFSGMCLADE ADFMAQLLGN CSLPNELPCS SNFGVSPAYW TGHESNMNMG  60
GAREVSVYSS NDTNNSMYTD GSSLLFSPPS HENYYSSHSR PILMRNDSSI TMEHGLVDTN  120
NPSEADDFLN QDVSNDSMEF DENLPEAALN GKGLQLGRTD YEQFSEDKMD SPSESSKKRS  180
RLHGLGHVPK NKRSAKLEKD LKSGEMDGKN KVVLQRQNST ISCCSEDESN VSHMLTRKTR  240
ASRGSATDPQ SLYARKRRER INERLRTLQT LIPNGTKVDI STMLEEAVQY VKFLQLQIKL  300
LSSDDLWMYS PIAYNGMDLG LDLRIDIPK
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankHG9755222e-35HG975522.1 Solanum lycopersicum chromosome ch10, complete genome.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009602073.10.0PREDICTED: transcription factor bHLH139-like
TrEMBLA0A1S3X4Z40.0A0A1S3X4Z4_TOBAC; transcription factor bHLH139-like
STRINGXP_009602073.10.0(Nicotiana tomentosiformis)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G14760.11e-50bHLH family protein