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PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | XP_009602074.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana
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Family | bHLH | ||||||||
Protein Properties | Length: 329aa MW: 36721.8 Da PI: 5.1184 | ||||||||
Description | bHLH family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | HLH | 34.6 | 3.3e-11 | 255 | 295 | 10 | 55 |
HHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS HLH 10 rrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 r+RR+riN+++ +L++l+P+ +K++ +++Le+Av+Y+k Lq XP_009602074.1 255 RKRRERINERLRTLQTLIPNG-----TKVDISTMLEEAVQYVKFLQ 295 9******************97.....8******************9 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF47459 | 4.06E-14 | 245 | 310 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
PROSITE profile | PS50888 | 15.44 | 245 | 294 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Gene3D | G3DSA:4.10.280.10 | 1.5E-12 | 250 | 304 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
SMART | SM00353 | 1.1E-11 | 251 | 300 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
CDD | cd00083 | 5.42E-12 | 254 | 299 | No hit | No description |
Pfam | PF00010 | 1.6E-8 | 255 | 295 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0046983 | Molecular Function | protein dimerization activity |
Sequence ? help Back to Top |
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Protein Sequence Length: 329 aa Download sequence Send to blast |
MTAGHTGEWS SFSGMCLADE ADFMAQLLGN CSLPNELPCS SNFGVSPAYW TGHESNMNMG 60 GAREVSVYSS NDTNNSMYTD GSSLLFSPPS HENYYSSHSR PILMRNDSSI TMEHGLVDTN 120 NPSEADDFLN QDVSNDSMEF DENLPEAALN GKGLQLGRTD YEQFSEDKMD SPSESSKKRS 180 RLHGLGHVPK NKRSAKLEKD LKSGEMDGKN KVVLQRQNST ISCCSEDESN VSHMLTRKTR 240 ASRGSATDPQ SLYARKRRER INERLRTLQT LIPNGTKVDI STMLEEAVQY VKFLQLQIKL 300 LSSDDLWMYS PIAYNGMDLG LDLRIDIPK |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | HG975522 | 2e-35 | HG975522.1 Solanum lycopersicum chromosome ch10, complete genome. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_009602073.1 | 0.0 | PREDICTED: transcription factor bHLH139-like | ||||
TrEMBL | A0A1S3X4Z4 | 0.0 | A0A1S3X4Z4_TOBAC; transcription factor bHLH139-like | ||||
STRING | XP_009602073.1 | 0.0 | (Nicotiana tomentosiformis) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G14760.1 | 1e-50 | bHLH family protein |