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PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | XP_009602073.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana
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Family | bHLH | ||||||||
Protein Properties | Length: 331aa MW: 36938.1 Da PI: 4.9182 | ||||||||
Description | bHLH family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | HLH | 34.6 | 3.4e-11 | 257 | 297 | 10 | 55 |
HHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS HLH 10 rrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 r+RR+riN+++ +L++l+P+ +K++ +++Le+Av+Y+k Lq XP_009602073.1 257 RKRRERINERLRTLQTLIPNG-----TKVDISTMLEEAVQYVKFLQ 297 9******************97.....8******************9 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50888 | 15.44 | 247 | 296 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
SuperFamily | SSF47459 | 4.06E-14 | 247 | 312 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Gene3D | G3DSA:4.10.280.10 | 1.5E-12 | 252 | 306 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
SMART | SM00353 | 1.1E-11 | 253 | 302 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
CDD | cd00083 | 6.16E-12 | 256 | 301 | No hit | No description |
Pfam | PF00010 | 1.6E-8 | 257 | 297 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0046983 | Molecular Function | protein dimerization activity |
Sequence ? help Back to Top |
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Protein Sequence Length: 331 aa Download sequence Send to blast |
MEPVASISGE WSSFSGMCLA DEADFMAQLL GNCSLPNELP CSSNFGVSPA YWTGHESNMN 60 MGGAREVSVY SSNDTNNSMY TDGSSLLFSP PSHENYYSSH SRPILMRNDS SITMEHGLVD 120 TNNPSEADDF LNQDVSNDSM EFDENLPEAA LNGKGLQLGR TDYEQFSEDK MDSPSESSKK 180 RSRLHGLGHV PKNKRSAKLE KDLKSGEMDG KNKVVLQRQN STISCCSEDE SNVSHMLTRK 240 TRASRGSATD PQSLYARKRR ERINERLRTL QTLIPNGTKV DISTMLEEAV QYVKFLQLQI 300 KLLSSDDLWM YSPIAYNGMD LGLDLRIDIP K |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | HG975522 | 2e-35 | HG975522.1 Solanum lycopersicum chromosome ch10, complete genome. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_009602073.1 | 0.0 | PREDICTED: transcription factor bHLH139-like | ||||
TrEMBL | A0A1S3X4Z4 | 0.0 | A0A1S3X4Z4_TOBAC; transcription factor bHLH139-like | ||||
STRING | XP_009602073.1 | 0.0 | (Nicotiana tomentosiformis) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA639 | 22 | 101 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G14760.1 | 8e-51 | bHLH family protein |