PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_009601691.1
Organism
Nicotiana tomentosiformis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana
Family M-type_MADS
Protein Properties Length: 242aa    MW: 26781.5 Da    PI: 10.5014
Description M-type_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_009601691.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF73.91.3e-231762449
                    -SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEE CS
          SRF-TF  4 enksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyey 49
                    +n+sn qvtfskRr+g++KKA+EL++LC+aeva+++fs+  k+y +
  XP_009601691.1 17 QNQSNLQVTFSKRRAGLFKKASELCTLCGAEVALVVFSPGKKVYSF 62
                    79******************************************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM004324.3E-31665IPR002100Transcription factor, MADS-box
PROSITE profilePS5006623.759666IPR002100Transcription factor, MADS-box
CDDcd002651.58E-33776No hitNo description
SuperFamilySSF554551.83E-26780IPR002100Transcription factor, MADS-box
PRINTSPR004041.1E-18828IPR002100Transcription factor, MADS-box
PfamPF003195.3E-251662IPR002100Transcription factor, MADS-box
PRINTSPR004041.1E-182843IPR002100Transcription factor, MADS-box
PRINTSPR004041.1E-184364IPR002100Transcription factor, MADS-box
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 242 aa     Download sequence    Send to blast
MGKRSKGRQK VDMVKMQNQS NLQVTFSKRR AGLFKKASEL CTLCGAEVAL VVFSPGKKVY  60
SFGHPCVDSV VDRFLTRNYP PNNGHNQLIV AHRNANVRDL NMELTNIEGI LQMEKNRGEA  120
LHARKRDNGH WWEAPIEELN LFQLQQLKEA MESIKKNVER KAHNQQMVTS NAFPFLTFGS  180
ALEPIGARAR SSYGSYGSFP FQNMVSGLTF GAPSANSAGG SASSVVPVIP ENPGTSRPSM  240
RN
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
3kov_A5e-15794188Myocyte-specific enhancer factor 2A
3kov_B5e-15794188Myocyte-specific enhancer factor 2A
3kov_I5e-15794188Myocyte-specific enhancer factor 2A
3kov_J5e-15794188Myocyte-specific enhancer factor 2A
3p57_A5e-15794188Myocyte-specific enhancer factor 2A
3p57_B5e-15794188Myocyte-specific enhancer factor 2A
3p57_C5e-15794188Myocyte-specific enhancer factor 2A
3p57_D5e-15794188Myocyte-specific enhancer factor 2A
3p57_I5e-15794188Myocyte-specific enhancer factor 2A
3p57_J5e-15794188Myocyte-specific enhancer factor 2A
5f28_A7e-15794289MEF2C
5f28_B7e-15794289MEF2C
5f28_C7e-15794289MEF2C
5f28_D7e-15794289MEF2C
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor. Required for suppression of cellularization and promotion of nuclear proliferation during early endosperm development. The FERTILIZATION-INDEPENDENT SEED (FIS) polycomb complex is required for suppression of ALG62 expression at the end of the syncytial phase of endosperm development. {ECO:0000269|PubMed:18334668}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009601691.10.0PREDICTED: agamous-like MADS-box protein AGL62
SwissprotQ9FKK23e-57AGL62_ARATH; Agamous-like MADS-box protein AGL62
TrEMBLA0A1S4B1C01e-166A0A1S4B1C0_TOBAC; agamous-like MADS-box protein AGL62
STRINGXP_009601691.10.0(Nicotiana tomentosiformis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA20424223
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G60440.12e-59AGAMOUS-like 62
Publications ? help Back to Top
  1. Xu W, et al.
    Endosperm and Nucellus Develop Antagonistically in Arabidopsis Seeds.
    Plant Cell, 2016. 28(6): p. 1343-60
    [PMID:27233529]
  2. Figueiredo DD,Batista RA,Roszak PJ,Köhler C
    Auxin production couples endosperm development to fertilization.
    Nat Plants, 2015. 1: p. 15184
    [PMID:27251719]
  3. Figueiredo DD,Batista RA,Roszak PJ,Hennig L,Köhler C
    Auxin production in the endosperm drives seed coat development in Arabidopsis.
    Elife, 2017.
    [PMID:27848912]
  4. Fiume E,Coen O,Xu W,Lepiniec L,Magnani E
    Growth of the Arabidopsis sub-epidermal integument cell layers might require an endosperm signal.
    Plant Signal Behav, 2017. 12(8): p. e1339000
    [PMID:28613109]
  5. Zhang S, et al.
    FERTILIZATION-INDEPENDENT SEED-Polycomb Repressive Complex 2 Plays a Dual Role in Regulating Type I MADS-Box Genes in Early Endosperm Development.
    Plant Physiol., 2018. 177(1): p. 285-299
    [PMID:29523711]