PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | XP_009601554.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana
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Family | NAC | ||||||||
Protein Properties | Length: 337aa MW: 38093.7 Da PI: 6.6732 | ||||||||
Description | NAC family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | NAM | 182.3 | 1.2e-56 | 5 | 132 | 1 | 129 |
NAM 1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLpkkvkaeekewyfFskrdkkyatgkrknratksgyWkatgkdkevlsk 95 lppGfrFhPtdeel+++yL++kv++ ++++ ++i++vd++k+ePwdLp+k++ +ekewyfFs +d+ky+tg r+nrat++gyWk+tgkdke+++ XP_009601554.1 5 LPPGFRFHPTDEELITYYLTNKVSDFNFTA-KAIADVDLNKCEPWDLPAKASMGEKEWYFFSLKDRKYPTGLRTNRATEAGYWKTTGKDKEIFRG 98 79*************************999.88***************999999****************************************9 PP NAM 96 kgelvglkktLvfykgrapkgektdWvmheyrle 129 ++ lvg+kktLvfy+grapkgekt+Wvmheyrle XP_009601554.1 99 GSVLVGMKKTLVFYRGRAPKGEKTNWVMHEYRLE 132 9999****************************85 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF101941 | 6.15E-64 | 3 | 152 | IPR003441 | NAC domain |
PROSITE profile | PS51005 | 59.891 | 5 | 152 | IPR003441 | NAC domain |
Pfam | PF02365 | 7.9E-29 | 6 | 131 | IPR003441 | NAC domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 337 aa Download sequence Send to blast |
MEENLPPGFR FHPTDEELIT YYLTNKVSDF NFTAKAIADV DLNKCEPWDL PAKASMGEKE 60 WYFFSLKDRK YPTGLRTNRA TEAGYWKTTG KDKEIFRGGS VLVGMKKTLV FYRGRAPKGE 120 KTNWVMHEYR LETKFGFKPS KEEWVVCRVF HKSSTAKKPQ PTSSSQQSEE SPNCDTYTFA 180 NELGDIEPPN NFYGLATPSN GHICNNISLQ NYSNENMMNM NLNMNLAAAA TREAAISNTL 240 PLLPAAWSSS LLCSNLPSVD SLLLRALQFR GYNNQPREAT TSTTDYPFIQ TQNISHIGID 300 YNNPNLAVEV PSSSMVSDPV QQQQPQEQSY KLGSNIW |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1ut4_A | 2e-56 | 4 | 158 | 16 | 171 | NO APICAL MERISTEM PROTEIN |
1ut4_B | 2e-56 | 4 | 158 | 16 | 171 | NO APICAL MERISTEM PROTEIN |
1ut7_A | 2e-56 | 4 | 158 | 16 | 171 | NO APICAL MERISTEM PROTEIN |
1ut7_B | 2e-56 | 4 | 158 | 16 | 171 | NO APICAL MERISTEM PROTEIN |
3swm_A | 2e-56 | 4 | 158 | 19 | 174 | NAC domain-containing protein 19 |
3swm_B | 2e-56 | 4 | 158 | 19 | 174 | NAC domain-containing protein 19 |
3swm_C | 2e-56 | 4 | 158 | 19 | 174 | NAC domain-containing protein 19 |
3swm_D | 2e-56 | 4 | 158 | 19 | 174 | NAC domain-containing protein 19 |
3swp_A | 2e-56 | 4 | 158 | 19 | 174 | NAC domain-containing protein 19 |
3swp_B | 2e-56 | 4 | 158 | 19 | 174 | NAC domain-containing protein 19 |
3swp_C | 2e-56 | 4 | 158 | 19 | 174 | NAC domain-containing protein 19 |
3swp_D | 2e-56 | 4 | 158 | 19 | 174 | NAC domain-containing protein 19 |
4dul_A | 2e-56 | 4 | 158 | 16 | 171 | NAC domain-containing protein 19 |
4dul_B | 2e-56 | 4 | 158 | 16 | 171 | NAC domain-containing protein 19 |
Search in ModeBase |
Binding Motif ? help Back to Top | |||
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Motif ID | Method | Source | Motif file |
MP00364 | DAP | Transfer from AT3G18400 | Download |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | Retrieve |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_009601554.1 | 0.0 | PREDICTED: protein CUP-SHAPED COTYLEDON 3-like isoform X1 | ||||
Refseq | XP_016504286.1 | 0.0 | PREDICTED: protein CUP-SHAPED COTYLEDON 3-like | ||||
TrEMBL | A0A1S4CT49 | 0.0 | A0A1S4CT49_TOBAC; protein CUP-SHAPED COTYLEDON 3-like | ||||
STRING | XP_009601554.1 | 0.0 | (Nicotiana tomentosiformis) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA152 | 24 | 279 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G18400.1 | 4e-99 | NAC domain containing protein 58 |