PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_009601554.1

Organism

Nicotiana tomentosiformis

Taxonomic ID

4098

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana

Family

NAC

Protein Properties

Length: 337aa MW: 38093.7 Da PI: 6.6732

Description

NAC family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_009601554.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	NAM	182.3	1.2e-56	5	132	1	129
NAM 1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLpkkvkaeekewyfFskrdkkyatgkrknratksgyWkatgkdkevlsk 95 lppGfrFhPtdeel+++yL++kv++ ++++ ++i++vd++k+ePwdLp+k++ +ekewyfFs +d+ky+tg r+nrat++gyWk+tgkdke+++ XP_009601554.1 5 LPPGFRFHPTDEELITYYLTNKVSDFNFTA-KAIADVDLNKCEPWDLPAKASMGEKEWYFFSLKDRKYPTGLRTNRATEAGYWKTTGKDKEIFRG 98 79***********************999.88***********999999************************************9 PP NAM 96 kgelvglkktLvfykgrapkgektdWvmheyrle 129 ++ lvg+kktLvfy+grapkgekt+Wvmheyrle XP_009601554.1 99 GSVLVGMKKTLVFYRGRAPKGEKTNWVMHEYRLE 132 9999**************************85 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF101941	6.15E-64	3	152	IPR003441	NAC domain
PROSITE profile	PS51005	59.891	5	152	IPR003441	NAC domain
Pfam	PF02365	7.9E-29	6	131	IPR003441	NAC domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 337 aa Download sequence Send to blast
MEENLPPGFR FHPTDEELIT YYLTNKVSDF NFTAKAIADV DLNKCEPWDL PAKASMGEKE 60 WYFFSLKDRK YPTGLRTNRA TEAGYWKTTG KDKEIFRGGS VLVGMKKTLV FYRGRAPKGE 120 KTNWVMHEYR LETKFGFKPS KEEWVVCRVF HKSSTAKKPQ PTSSSQQSEE SPNCDTYTFA 180 NELGDIEPPN NFYGLATPSN GHICNNISLQ NYSNENMMNM NLNMNLAAAA TREAAISNTL 240 PLLPAAWSSS LLCSNLPSVD SLLLRALQFR GYNNQPREAT TSTTDYPFIQ TQNISHIGID 300 YNNPNLAVEV PSSSMVSDPV QQQQPQEQSY KLGSNIW

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
1ut4_A	2e-56	4	158	16	171	NO APICAL MERISTEM PROTEIN
1ut4_B	2e-56	4	158	16	171	NO APICAL MERISTEM PROTEIN
1ut7_A	2e-56	4	158	16	171	NO APICAL MERISTEM PROTEIN
1ut7_B	2e-56	4	158	16	171	NO APICAL MERISTEM PROTEIN
3swm_A	2e-56	4	158	19	174	NAC domain-containing protein 19
3swm_B	2e-56	4	158	19	174	NAC domain-containing protein 19
3swm_C	2e-56	4	158	19	174	NAC domain-containing protein 19
3swm_D	2e-56	4	158	19	174	NAC domain-containing protein 19
3swp_A	2e-56	4	158	19	174	NAC domain-containing protein 19
3swp_B	2e-56	4	158	19	174	NAC domain-containing protein 19
3swp_C	2e-56	4	158	19	174	NAC domain-containing protein 19
3swp_D	2e-56	4	158	19	174	NAC domain-containing protein 19
4dul_A	2e-56	4	158	16	171	NAC domain-containing protein 19
4dul_B	2e-56	4	158	16	171	NAC domain-containing protein 19
Search in ModeBase

Binding Motif ? help Back to Top
Motif ID	Method	Source	Motif file
MP00364	DAP	Transfer from AT3G18400	Download

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	Retrieve

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_009601554.1	0.0	PREDICTED: protein CUP-SHAPED COTYLEDON 3-like isoform X1
Refseq	XP_016504286.1	0.0	PREDICTED: protein CUP-SHAPED COTYLEDON 3-like
TrEMBL	A0A1S4CT49	0.0	A0A1S4CT49_TOBAC; protein CUP-SHAPED COTYLEDON 3-like
STRING	XP_009601554.1	0.0	(Nicotiana tomentosiformis)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Asterids	OGEA152	24	279

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G18400.1	4e-99	NAC domain containing protein 58