PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_009601191.1
Organism
Nicotiana tomentosiformis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana
Family WRKY
Protein Properties Length: 633aa    MW: 69138.4 Da    PI: 7.1404
Description WRKY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_009601191.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRKY95.73.3e-30277336159
                     ---SS-EEEEEEE--TT-SS-EEEEEE-ST.T---EEEEEE-SSSTTEEEEEEES--SS- CS
            WRKY   1 ldDgynWrKYGqKevkgsefprsYYrCtsa.gCpvkkkversaedpkvveitYegeHnhe 59 
                     ++Dg++WrKYGqK  kg+++pr+YYrCt a +Cpv+k+v+r+aed +++++tYeg+Hnh+
  XP_009601191.1 277 MNDGCQWRKYGQKIAKGNPCPRAYYRCTVAqSCPVRKQVQRCAEDMSILITTYEGTHNHP 336
                     58***************************99****************************7 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.20.25.807.6E-32262338IPR003657WRKY domain
SuperFamilySSF1182901.44E-27270338IPR003657WRKY domain
PROSITE profilePS5081128.805272338IPR003657WRKY domain
SMARTSM007741.0E-36277337IPR003657WRKY domain
PfamPF031061.0E-26278336IPR003657WRKY domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 633 aa     Download sequence    Send to blast
MEAALRNSIH VKEENKNKAE SCPDREDCAE NIFLKVGKGR KEREDDKSKS SSPQQKDFTL  60
DNEGAAVMVK RERSPPELNS MASSSTQKEQ NDQLASAKVE MREVMEENQR LRTHLDRIMK  120
DYRNLQMQFH DIAQKEVEKS SSTVNTTHHE SDEEADQLVS LSLGRTSSDM KKEELSKIFS  180
KDKAHYNEEE EHKAGGLTLG LDCKFEMSAK TTPTTESSPV ILSPENSLEE TKEENGETWP  240
PNKILKTMRN GDDDVSQQNP TKRARVSVRV RCDAPTMNDG CQWRKYGQKI AKGNPCPRAY  300
YRCTVAQSCP VRKQVQRCAE DMSILITTYE GTHNHPLPLA ATAMASTTAA AASMLLSGSS  360
SSSDPSPQVT AAAATTTSSA NLNGLNFYLS DTSKSKPPFY FPNSSFSSSS APNSLPTITL  420
DLTSTSSSSS LSHLTRMGST STFPPARYNN NNNSSANVLN FSSLESNPLP ISWSNGVLNY  480
ANQAYNKNQN IASLAFSSRP TQENLFQSYL QRNINTQSSL PPDAISAATK AITSDPNFHS  540
ALAAALTSII GNTGIGHNNL NHVTEPFPVL SSLPSSSNPN NKCSSTFLNK PTSSSANTQS  600
ANNNLVFFTQ PNSSLPFSAP KGKSTSPSDN KFD
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2ayd_A2e-19264338174WRKY transcription factor 1
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtIn association with WRKY72A, contributes to basal defense against root-knot nematodes (RKNs) and potato aphids, as well as Mi-1-mediated gene-for-gene resistance to these pests (PubMed:20409007). Both WRKY72A and WRKY72B are not required for gene-for-gene resistance mediated by Pto, another tomato R gene (PubMed:20409007). {ECO:0000269|PubMed:20409007}.
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Induced by infection with the root-knot nematode (RKN) Meloidogyne incognita and potato aphids. {ECO:0000269|PubMed:20409007}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankGU0174221e-152GU017422.1 Solanum lycopersicum WRKY72-like protein mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009601191.10.0PREDICTED: probable WRKY transcription factor 61
SwissprotD8VNC60.0WK72B_SOLLC; WRKY transcription factor 72B
TrEMBLA0A1S4CA480.0A0A1S4CA48_TOBAC; probable WRKY transcription factor 61
STRINGXP_009601191.10.0(Nicotiana tomentosiformis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA19452464
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G15130.18e-65WRKY DNA-binding protein 72
Publications ? help Back to Top
  1. Tomato Genome Consortium
    The tomato genome sequence provides insights into fleshy fruit evolution.
    Nature, 2012. 485(7400): p. 635-41
    [PMID:22660326]