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Plant Transcription
Factor Database
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Transcription Factor Information
|
Basic
Information? help
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| TF ID |
XP_009600953.1 |
| Organism |
|
| Taxonomic ID |
|
| Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana
|
| Family |
bHLH |
| Protein Properties |
Length: 337aa MW: 38205.5 Da PI: 5.2125 |
| Description |
bHLH family protein |
| Gene Model |
| Gene Model ID |
Type |
Source |
Coding Sequence |
| XP_009600953.1 | genome | NCBI | View CDS |
|
| Signature Domain? help Back to Top |
 |
| No. |
Domain |
Score |
E-value |
Start |
End |
HMM Start |
HMM End |
| 1 | HLH | 38.5 | 2.1e-12 | 169 | 212 | 6 | 54 |
HHHHHHHHHHHHHHHHHHHCTSCC.C...TTS-STCHHHHHHHHHHHHHH CS
HLH 6 nerErrRRdriNsafeeLrellPk.askapskKlsKaeiLekAveYIksL 54
++ErrRR+r+N++++ Lr+++Pk + K++ +iL A++Y+k+L
XP_009600953.1 169 LMAERRRRKRLNDRLSMLRSIVPKiS------KMDRTSILGDAIDYMKEL 212
589*********************66......****************98 PP
|
| Sequence ? help Back to Top |
| Protein Sequence Length: 337 aa
Download sequence Send
to blast |
MELTQQDLLE EILAPRRESW STFPSGVNEA FPNGWTFESP FYQNPEFVAL NSSLLGLFTP 60
SESNFQCPLI TSPESYPLIL DSFTAPDKIN DTILLPLQIQ DEYNNRAMFE NQELGIISSD 120
FNGLQEDLNS VSTNDVKVEE ANSRIMGVSN VGEKKNKVRK REGQPSKNLM AERRRRKRLN 180
DRLSMLRSIV PKISKMDRTS ILGDAIDYMK ELLEKIHTLR EDDNVKDEIK DIKLVGNFKE 240
LKPNEALVRK PPKFEVERRN VDTRIKICCA AKPGMLLSTV STLEALGLDV QQCVISCFSD 300
FSLQASCSEA REHRTILSSE DVKQTLFKTA GYGGRCL
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| 3D Structure ? help Back to Top |
 |
| PDB ID |
Evalue |
Query Start |
Query End |
Hit Start |
Hit End |
Description |
| 5gnj_A | 9e-13 | 164 | 234 | 5 | 76 | Transcription factor MYC2 |
| 5gnj_B | 9e-13 | 164 | 234 | 5 | 76 | Transcription factor MYC2 |
| 5gnj_E | 9e-13 | 164 | 234 | 5 | 76 | Transcription factor MYC2 |
| 5gnj_F | 9e-13 | 164 | 234 | 5 | 76 | Transcription factor MYC2 |
| 5gnj_G | 9e-13 | 164 | 234 | 5 | 76 | Transcription factor MYC2 |
| 5gnj_I | 9e-13 | 164 | 234 | 5 | 76 | Transcription factor MYC2 |
| 5gnj_M | 9e-13 | 164 | 234 | 5 | 76 | Transcription factor MYC2 |
| 5gnj_N | 9e-13 | 164 | 234 | 5 | 76 | Transcription factor MYC2 |
| Search in ModeBase |
| Nucleic Localization
Signal ? help
Back to Top |
 |
| No. |
Start |
End |
Sequence |
| 1 | 158 | 177 | RKREGQPSKNLMAERRRRKR |
| 2 | 171 | 178 | ERRRRKRL |
| Functional Description ? help
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| Source |
Description |
| UniProt | Transcription factor. May be involved in the differentiation of stomatal guard cells. {ECO:0000269|PubMed:17088607}. |
| Annotation --
Nucleotide ? help
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| Source |
Hit ID |
E-value |
Description |
| GenBank | HG975441 | 2e-66 | HG975441.1 Solanum pennellii chromosome ch02, complete genome. |
| GenBank | HG975514 | 2e-66 | HG975514.1 Solanum lycopersicum chromosome ch02, complete genome. |
| Publications
? help Back to Top |
- Skinner MK,Rawls A,Wilson-Rawls J,Roalson EH
Basic helix-loop-helix transcription factor gene family phylogenetics and nomenclature.
Differentiation, 2010. 80(1): p. 1-8
[PMID:20219281] - Ding Y, et al.
Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
BMC Plant Biol., 2013. 13: p. 229
[PMID:24377444] - Sharma N, et al.
NO FLOWERING IN SHORT DAY (NFL) is a bHLH transcription factor that promotes flowering specifically under short-day conditions in Arabidopsis.
Development, 2016. 143(4): p. 682-90
[PMID:26758694] - Chen YS, et al.
Two MYB-related transcription factors play opposite roles in sugar signaling in Arabidopsis.
Plant Mol. Biol., 2017. 93(3): p. 299-311
[PMID:27866313] - Ezer D, et al.
The G-Box Transcriptional Regulatory Code in Arabidopsis.
Plant Physiol., 2017. 175(2): p. 628-640
[PMID:28864470]
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