PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_009600874.1
Organism
Nicotiana tomentosiformis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana
Family bHLH
Protein Properties Length: 270aa    MW: 30739.8 Da    PI: 6.9782
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_009600874.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH45.11.8e-1492138354
                     HHHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHH CS
             HLH   3 rahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksL 54 
                     r+h+e+E+rRRdriN  +++Lr+l+P +     +K++Ka+ L+ +ve++k+L
  XP_009600874.1  92 RSHSEAEKRRRDRINAQLSTLRKLIPRS-----EKMDKAALLRSVVEHVKDL 138
                     78************************98.....8****************99 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5088816.29889138IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.102.9E-1592141IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474595.89E-1492149IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000103.9E-1292138IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003534.6E-1395144IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000832.94E-998139No hitNo description
Gene3DG3DSA:3.30.70.2604.4E-5179240No hitNo description
CDDcd048732.94E-8180242No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 270 aa     Download sequence    Send to blast
MPRSLREKLE HRDMMDNSSC SEYWPETETE TETETHFHHF QEVAVASPFL LPLIPNTCDD  60
TSFQLCENPC YWSQHLSEED ASASANASAA SRSHSEAEKR RRDRINAQLS TLRKLIPRSE  120
KMDKAALLRS VVEHVKDLKG RAKEISKVVN TPTDIDEVII EHLDEEENHE NSSNSIFLKV  180
CLCCDDRPEL FSELNRALKN MKLTTVEANI TSLGGRIKCV FVVKSINGVC LNSLKQSLRV  240
VLSRIAISPS TSNYRIKSKR QRFFLPANFS
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1256261KSKRQR
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankHG9755182e-34HG975518.1 Solanum lycopersicum chromosome ch06, complete genome.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009600874.10.0PREDICTED: transcription factor bHLH51-like
RefseqXP_016469195.10.0PREDICTED: transcription factor bHLH51-like
TrEMBLA0A1S3ZXL90.0A0A1S3ZXL9_TOBAC; transcription factor bHLH51-like
STRINGXP_009600874.10.0(Nicotiana tomentosiformis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA58202235
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G40200.16e-36bHLH family protein