PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_009600779.1
Organism
Nicotiana tomentosiformis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana
Family WRKY
Protein Properties Length: 481aa    MW: 52693.5 Da    PI: 7.362
Description WRKY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_009600779.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRKY919.7e-29223281259
                     --SS-EEEEEEE--TT-SS-EEEEEE-ST.T---EEEEEE-SSSTTEEEEEEES--SS- CS
            WRKY   2 dDgynWrKYGqKevkgsefprsYYrCtsa.gCpvkkkversaedpkvveitYegeHnhe 59 
                     +Dg++WrKYGqK  +g+++prsYYrC+ a  Cpv+k+v+r+ ed +v+++tYeg+Hnh+
  XP_009600779.1 223 NDGCQWRKYGQKISRGNPCPRSYYRCSVApLCPVRKQVQRCVEDMSVLITTYEGTHNHS 281
                     8***************************99****************************7 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.20.25.803.9E-30207283IPR003657WRKY domain
SuperFamilySSF1182901.83E-25214283IPR003657WRKY domain
PROSITE profilePS5081127.428217283IPR003657WRKY domain
SMARTSM007744.4E-34222282IPR003657WRKY domain
PfamPF031063.0E-25223280IPR003657WRKY domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 481 aa     Download sequence    Send to blast
MEKKMDNSIT EEAVVARNEG NNHEEEAVRK SLKDDEFKSA IAEVNELRLE NARLRMLLEQ  60
VEKDYNSLQS RVSNISQPEF NQSASPTCTT ENIIAEESEL VSLRLGRSPS RIDQFKKDDK  120
KRHSCHSSDG LKLGLDYNIE VSKSDPIKPN TDPSPDKVLE TKTVDARESG PTSEIVKTMR  180
RGDNEVSQPS PSVKRAGDDD VSQPNVKRAR VSVRTKCDYP TINDGCQWRK YGQKISRGNP  240
CPRSYYRCSV APLCPVRKQV QRCVEDMSVL ITTYEGTHNH SLPIEATAMA STTSAAASML  300
LSGSSSSQSA NKDFRNLPNN SKSTPLYLSN SPSNSNPFPT ITLDFTTFPT TSSFTSFNFP  360
SNFQSNTGFL SNSLNFSSPE SDTLSKILGS GYVDYDPTTS LPYSKSLTNI GSSNLGKPSP  420
APKQFDQPVL GKSKNSISNN LKEESSQQAL TETLTKAIAS DPSFQSVLAA AISSMVGATK  480
T
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2ayd_A1e-21209283174WRKY transcription factor 1
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAY2204770.0AY220477.1 Nicotiana tabacum Avr9/Cf-9 rapidly elicited protein 126 (ACRE126) mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009600779.10.0PREDICTED: probable WRKY transcription factor 72
TrEMBLA0A1S3WX580.0A0A1S3WX58_TOBAC; probable WRKY transcription factor 72
STRINGXP_009600779.10.0(Nicotiana tomentosiformis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA128051921
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G15130.12e-55WRKY DNA-binding protein 72