PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_009600727.1

Organism

Nicotiana tomentosiformis

Taxonomic ID

4098

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana

Family

C2H2

Protein Properties

Length: 284aa MW: 31358.6 Da PI: 8.4496

Description

C2H2 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_009600727.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-C2H2	13.3	0.00025	98	120	1	23
EEETTTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirtH 23 ++C+ C++ Fs++ L H++ H XP_009600727.1 98 FSCSFCKREFSTSQALGGHQNAH 120 89******************988 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Gene3D	G3DSA:3.30.160.60	1.1E-4	88	124	IPR013087	Zinc finger C2H2-type/integrase DNA-binding domain
SuperFamily	SSF57667	3.44E-6	95	125	No hit	No description
PROSITE profile	PS50157	11.552	98	125	IPR007087	Zinc finger, C2H2
PROSITE pattern	PS00028	0	100	120	IPR007087	Zinc finger, C2H2

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003676	Molecular Function	nucleic acid binding
GO:0046872	Molecular Function	metal ion binding

Sequence ? help Back to Top
Protein Sequence Length: 284 aa Download sequence Send to blast
MKKPCSSEAS SISAANEEID TNTKKMKGKV MDLGSELKPH ELSSAGVLLD LKVHNGASNL 60 ELNLFNLTSS IKNSAPASES SNEGTPNKQR RSSETRVFSC SFCKREFSTS QALGGHQNAH 120 KQERALAKRR NALVDVVSPF GPPNYHTYYN PYSSYTTHLP FHGSFTSRSS LGVQGHSSAI 180 HKPSPYNPWS AFSGYNYRFN PEKWSSSGSS LFRPENLGIG SAPLENSLKF ENKNSAKGFS 240 VRDSPVKVDN NRDGNNKRKM GFVEEDAEEN EEESEIDLDL NLKL

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_009600727.2	0.0	PREDICTED: transcriptional regulator SUPERMAN-like
TrEMBL	A0A1S4CR18	0.0	A0A1S4CR18_TOBAC; zinc finger protein 4-like
STRING	XP_009600727.1	0.0	(Nicotiana tomentosiformis)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Asterids	OGEA3967	21	38

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G25160.1	8e-23	zinc finger protein 3