PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_009600492.1
Organism
Nicotiana tomentosiformis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana
Family HSF
Protein Properties Length: 478aa    MW: 52929.6 Da    PI: 4.4689
Description HSF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_009600492.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HSF_DNA-bind115.53.4e-36281192102
                     HHHHHHHHHCTGGGTTTSEESSSSSEEEES-HHHHHHHTHHHHSTT--HHHHHHHHHHTTEEE---SSBTTTTXTTSEEEEESXXXXXXXXXXXX CS
    HSF_DNA-bind   2 FlkklyeiledeelkeliswsengnsfvvldeeefakkvLpkyFkhsnfaSFvRQLnmYgFkkvkdeekkskskekiweFkhksFkkgkkellek 96 
                     Fl k+y++++d+++++++sw  ++nsfvv+d+ efak++LpkyFkh+nf+SFvRQLn+YgF+kv+ ++         weF+++ F +g+k+ll++
  XP_009600492.1  28 FLVKTYDMVDDPSTEKIVSWGPTNNSFVVWDPPEFAKDLLPKYFKHNNFSSFVRQLNTYGFRKVEPDR---------WEFSNEGFLRGQKHLLRN 113
                     9********************999******************************************99.........****************** PP

                     XXXXXX CS
    HSF_DNA-bind  97 ikrkks 102
                     i r+k 
  XP_009600492.1 114 ISRRKP 119
                     ***986 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF467852.18E-3623117IPR011991Winged helix-turn-helix DNA-binding domain
SMARTSM004152.4E-6324117IPR000232Heat shock factor (HSF)-type, DNA-binding
Gene3DG3DSA:1.10.10.103.1E-4025117IPR011991Winged helix-turn-helix DNA-binding domain
PRINTSPR000567.2E-202851IPR000232Heat shock factor (HSF)-type, DNA-binding
PfamPF004471.3E-3228117IPR000232Heat shock factor (HSF)-type, DNA-binding
PRINTSPR000567.2E-206678IPR000232Heat shock factor (HSF)-type, DNA-binding
PROSITE patternPS0043406791IPR000232Heat shock factor (HSF)-type, DNA-binding
PRINTSPR000567.2E-207991IPR000232Heat shock factor (HSF)-type, DNA-binding
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 478 aa     Download sequence    Send to blast
MGSTSGDAGG GGSPALVPMP SANAPPPFLV KTYDMVDDPS TEKIVSWGPT NNSFVVWDPP  60
EFAKDLLPKY FKHNNFSSFV RQLNTYGFRK VEPDRWEFSN EGFLRGQKHL LRNISRRKPA  120
HGHSQQQLHG QSASVGACVE VGKFGLEEEV ERLKRDKNVL MQELVKLRQQ XQTTDNQMRT  180
MVQSLQVMEQ RQQQMMSFLE KVVNSPGFLA QFVQQQNDGN RRAMEGNKKL RIKQDFPSDD  240
LSVSPADGQI VKYQPVMNEG AKAILRQIMK QDSSPRLENF SNSPESVLIC DGSPQSNALD  300
SGSSNRVSGV TLQEVPPTSA QPFASATSAV AGQSSSAAIS EIQSSPLDMT MPELSQLQEI  360
VPVNNMDTDG PEMENGSFMD PTLGGNGNLP LGIDTFSPDP QNEWQSTLMD DIGELPSLGD  420
PFWEKFLQSP LPTETEEMDS VEIEDIKTTE TEPLENGWDK AQHMEHLTEQ XGATNIKQ
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5d5u_B7e-292011718129Heat shock factor protein 1
5d5v_B7e-292011718129Heat shock factor protein 1
5d5v_D7e-292011718129Heat shock factor protein 1
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtDNA-binding protein that specifically binds heat shock promoter elements (HSE) and activates transcription. {ECO:0000250}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAP0108020.0AP010802.1 Solanum lycopersicum DNA, chromosome 8, clone: C08SLm0015J19, complete sequence.
GenBankHG9755200.0HG975520.1 Solanum lycopersicum chromosome ch08, complete genome.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009781208.10.0PREDICTED: LOW QUALITY PROTEIN: heat shock factor protein HSF8
SwissprotQ401520.0HSF8_SOLLC; Heat shock factor protein HSF8
TrEMBLA0A1U7WRJ70.0A0A1U7WRJ7_NICSY; LOW QUALITY PROTEIN: heat shock factor protein HSF8
STRINGXP_009600492.10.0(Nicotiana tomentosiformis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA64131931
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G16820.21e-133heat shock factor 3
Publications ? help Back to Top
  1. Zhu B, et al.
    Identification and characterization of a novel heat shock transcription factor gene, GmHsfA1, in soybeans (Glycine max).
    J. Plant Res., 2006. 119(3): p. 247-56
    [PMID:16570125]
  2. Cai SY, et al.
    HsfA1a upregulates melatonin biosynthesis to confer cadmium tolerance in tomato plants.
    J. Pineal Res., 2017.
    [PMID:28095626]
  3. Zhou J, et al.
    Heat Shock Factor HsfA1a Is Essential for R Gene-Mediated Nematode Resistance and Triggers H2O2 Production1.
    Plant Physiol., 2018. 176(3): p. 2456-2471
    [PMID:29339397]