PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_009600422.1

Organism

Nicotiana tomentosiformis

Taxonomic ID

4098

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana

Family

bHLH

Protein Properties

Length: 252aa MW: 28823.5 Da PI: 7.1439

Description

bHLH family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_009600422.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	HLH	40.9	3.6e-13	66	118	1	54
CHHHHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHH CS HLH 1 rrrahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksL 54 ++ +hn+ Er+RR+++N +++Lr+llP a + ++kKls +++ + eYI +L XP_009600422.1 66 KKLSHNASERNRRKKMNFLYSTLRSLLPAA-NHQKKKLSFPATVSYVQEYIPEL 118 6789***********************7.578888************988 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50888	13.719	65	118	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamily	SSF47459	1.2E-13	66	135	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
Gene3D	G3DSA:4.10.280.10	1.3E-11	66	132	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
Pfam	PF00010	1.8E-10	66	118	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
CDD	cd00083	7.75E-9	66	123	No hit	No description
SMART	SM00353	1.5E-6	71	124	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0046983	Molecular Function	protein dimerization activity

Sequence ? help Back to Top
Protein Sequence Length: 252 aa Download sequence Send to blast
MLVFSSCIFP NMNTEWPFEE PQNYDQQNNI LQNEITNDSF EGLHIDNIQY SYSKEKSFDN 60 QSLMAKKLSH NASERNRRKK MNFLYSTLRS LLPAANHQKK KLSFPATVSY VQEYIPELKK 120 EIERLSQTKD LLLSTILSKK ADSLVQPNNY NNKRNTTSSA SSTSIFASPL CNGQVLVHIS 180 TTQTNGFPIS EAFQTLEEDG ILLLNATSFK SFGDKIFHSL HFQMQGTVGM EIQNLETKLL 240 VMYEENQNRS LA

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_009600422.1	0.0	PREDICTED: transcription factor ORG2-like
TrEMBL	A0A1S4DCF5	1e-159	A0A1S4DCF5_TOBAC; transcription factor bHLH101-like
STRING	XP_009600422.1	0.0	(Nicotiana tomentosiformis)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Asterids	OGEA2226	22	56

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G56970.1	8e-39	bHLH family protein