PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_009600306.1
Organism
Nicotiana tomentosiformis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana
Family ARR-B
Protein Properties Length: 753aa    MW: 83357.6 Da    PI: 6.4227
Description ARR-B family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_009600306.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1G2-like74.21.8e-23219272155
         G2-like   1 kprlrWtpeLHerFveaveqLGGsekAtPktilelmkvkgLtlehvkSHLQkYRl 55 
                     k++l+Wt  LH++F++a+++  G ++A Pktile+m+v+gLt+e+v+SHLQkYR+
  XP_009600306.1 219 KTKLVWTDALHNKFLQAIRET-GLDRAYPKTILEVMDVPGLTRENVASHLQKYRI 272
                     689*****************9.********************************6 PP
2Response_reg807.8e-27251331109
                     EEEESSSHHHHHHHHHHHHHTTCEEEEEESSHHHHHHHHHHHH..ESEEEEESSCTTSEHHHHHHHHHHHTTTSEEEEEESTTTHHHHHHHHHTT CS
    Response_reg   1 vlivdDeplvrellrqalekegyeevaeaddgeealellkekd..pDlillDiempgmdGlellkeireeepklpiivvtahgeeedalealkaG 93 
                     +++vdD+ + +++++  l+k +y +v +++++++al +l+ ++  +D+i+ D+ mp+m+G+el + i++e  ++p+++++a + ++++le l++G
  XP_009600306.1  25 IMVVDDDITCLSIVAAQLKKWKY-QVVTVKHARDALCILRVSNvsFDVIVSDVHMPDMNGFELQQVIAQEF-DIPVVFMSADDRDSMVLEGLERG 117
                     89*********************.9999************99999**********************9999.9********************** PP

                     ESEEEESS--HHHHHH CS
    Response_reg  94 akdflsKpfdpeelvk 109
                     a  fl Kp++p++l++
  XP_009600306.1 118 AVFFLPKPISPDDLRD 133
                     **************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF521722.85E-3121138IPR011006CheY-like superfamily
Gene3DG3DSA:3.40.50.23004.5E-3322146No hitNo description
SMARTSM004487.6E-2823135IPR001789Signal transduction response regulator, receiver domain
PROSITE profilePS5011037.24924139IPR001789Signal transduction response regulator, receiver domain
PfamPF000728.3E-2225134IPR001789Signal transduction response regulator, receiver domain
CDDcd001561.60E-2626139No hitNo description
PROSITE profilePS512949.476216275IPR017930Myb domain
Gene3DG3DSA:1.10.10.601.2E-24217276IPR009057Homeodomain-like
SuperFamilySSF466891.97E-17217276IPR009057Homeodomain-like
TIGRFAMsTIGR015571.0E-21219272IPR006447Myb domain, plants
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0000160Biological Processphosphorelay signal transduction system
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 753 aa     Download sequence    Send to blast
MGGEMVVANK SSEIIDSEFY KSYSIMVVDD DITCLSIVAA QLKKWKYQVV TVKHARDALC  60
ILRVSNVSFD VIVSDVHMPD MNGFELQQVI AQEFDIPVVF MSADDRDSMV LEGLERGAVF  120
FLPKPISPDD LRDIWQYAAL AKKNKGKGKS VVIEEIQENN SSSKSSSGLP KSPHENVESS  180
SSINVEKGNK EGKKEESKKK SARKHKEAEK EDSSIPQKKT KLVWTDALHN KFLQAIRETG  240
LDRAYPKTIL EVMDVPGLTR ENVASHLQKY RIFLRKVTEE SFRVQAADTN LANTATQSTF  300
GSKGLSTTSQ LSQENSGSQQ LFFKNNSLAE TSIRGSSSLS NRCATPAITL PGYGKAKLVL  360
DKGDSSKIKS SNANQLSTAE AAKNQTKSLV HEDISTQLLN AAISANQLIT RNLNSLHNSY  420
TAEERHESNQ SLVQRDSFLI GFERDKEFAS MLTSYLNQGA NRMQLTRLPN NVETGGRSGT  480
VLDQDWSSYI NQGATRMQLT RLQKYVETGE GSGTIPDQDC EGEKQSAALW SSYLNQGANN  540
VQLTRFPNNF ETGRGSGTKS GQDCEGEKQS VAMWSSFLNQ GANRVNQGEK QSEVVMWSSN  600
LQLTRFSNNF KTGGGSGTKL GQDYDVSTFD KNNATSYSSG IGDLTSPFYS QLNVQPFHVK  660
NSNDQEETTF NFTDGNNQGQ EAYYTLPLAY TPGEQGDHRG VTAEEGSSSQ LHHTHQNPEL  720
EVVLAHIPVF DHRALCSENA IYYLCLYNFS ARR
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1irz_A2e-18217278364ARR10-B
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_018626158.10.0PREDICTED: two-component response regulator ORR22-like
TrEMBLA0A1S3YST50.0A0A1S3YST5_TOBAC; uncharacterized protein LOC107779377
STRINGXP_009600306.10.0(Nicotiana tomentosiformis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA32902038
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G25180.11e-43response regulator 12