PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_009600245.1
Organism
Nicotiana tomentosiformis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana
Family B3
Protein Properties Length: 351aa    MW: 39962.8 Da    PI: 6.4067
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_009600245.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B3105.82.2e-3391200199
                     EEEE-..-HHHHTT-EE--HHH.HTT...........---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE CS
              B3   1 ffkvltpsdvlksgrlvlpkkfaeeh...........ggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkl 84 
                     f+k ltpsdv+k++rlv+pk++ae++           ++ +e++  l +edesg+sW+++++y+++s++yvltkGW++Fvk+++L++gD+v+F++
  XP_009600245.1  91 FEKPLTPSDVGKLNRLVIPKQHAEKYfplsgnnnnnnESGTEKGLLLGFEDESGKSWRFRYSYWNSSQSYVLTKGWSRFVKEKRLDAGDIVLFER 185
                     99****************************9999888555668899************************************************7 PP

                     -SS.SEE..EEEEE-S CS
              B3  85 dgr.sefelvvkvfrk 99 
                     + r ++ +l+++++r+
  XP_009600245.1 186 H-RfDGDRLFIGWRRR 200
                     5.559999******98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.40.330.101.6E-4282209IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019361.28E-3186199IPR015300DNA-binding pseudobarrel domain
CDDcd100171.50E-2989190No hitNo description
PROSITE profilePS5086314.52291201IPR003340B3 DNA binding domain
PfamPF023621.4E-3091201IPR003340B3 DNA binding domain
SMARTSM010191.7E-2791201IPR003340B3 DNA binding domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0045892Biological Processnegative regulation of transcription, DNA-templated
GO:0080167Biological Processresponse to karrikin
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 351 aa     Download sequence    Send to blast
MSINHISFET VWWTKQQQYM MMDSSSPSHD NTLPQFYHHH SPTSPETQTT TMFDFNLNNM  60
SNNEEDEEQI TEDKDQNIEQ REEVIPKEHL FEKPLTPSDV GKLNRLVIPK QHAEKYFPLS  120
GNNNNNNESG TEKGLLLGFE DESGKSWRFR YSYWNSSQSY VLTKGWSRFV KEKRLDAGDI  180
VLFERHRFDG DRLFIGWRRR NTAVSASVQE SSALVVPPGM VGGDAWAQVY YGGSGGHPYP  240
GAALPYQPDC LHAGRGVLQN QTTASVNNTR RQVRLFGVNL ECEADEPSWS KPPSTPDGGG  300
SSTSSHQGQG QASQHYYQYQ FQHSKPHVAA SSYHMDMNFS RDVNQTRYHQ G
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5os9_A4e-50872004113B3 domain-containing transcription factor NGA1
5os9_B4e-50872004113B3 domain-containing transcription factor NGA1
Search in ModeBase
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009600245.10.0PREDICTED: B3 domain-containing protein At2g36080-like isoform X1
SwissprotQ8GYJ27e-70Y2608_ARATH; B3 domain-containing protein At2g36080
TrEMBLA0A1S3Y9D40.0A0A1S3Y9D4_TOBAC; B3 domain-containing protein At2g36080-like
STRINGXP_009600245.10.0(Nicotiana tomentosiformis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA38012446
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G06250.23e-69B3 family protein
Publications ? help Back to Top
  1. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]
  2. Tanaka M, et al.
    The Minimum Open Reading Frame, AUG-Stop, Induces Boron-Dependent Ribosome Stalling and mRNA Degradation.
    Plant Cell, 2016. 28(11): p. 2830-2849
    [PMID:27760805]