PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Protein Features |

3D Structure |

Gene Ontology |

Orthologous Group |

Publication

Basic Information? help Back to Top

TF ID

XP_009600245.1

Organism

Nicotiana tomentosiformis

Taxonomic ID

4098

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana

Family

Protein Properties

Length: 351aa MW: 39962.8 Da PI: 6.4067

Description

B3 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_009600245.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	B3	105.8	2.2e-33	91	200	1	99
EEEE-..-HHHHTT-EE--HHH.HTT...........---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE CS B3 1 ffkvltpsdvlksgrlvlpkkfaeeh...........ggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkl 84 f+k ltpsdv+k++rlv+pk++ae++ ++ +e++ l +edesg+sW+++++y+++s++yvltkGW++Fvk+++L++gD+v+F++ XP_009600245.1 91 FEKPLTPSDVGKLNRLVIPKQHAEKYfplsgnnnnnnESGTEKGLLLGFEDESGKSWRFRYSYWNSSQSYVLTKGWSRFVKEKRLDAGDIVLFER 185 99**************************9999888555668899********************************************7 PP -SS.SEE..EEEEE-S CS B3 85 dgr.sefelvvkvfrk 99 + r ++ +l+++++r+ XP_009600245.1 186 H-RfDGDRLFIGWRRR 200 5.559999****98 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Gene3D	G3DSA:2.40.330.10	1.6E-42	82	209	IPR015300	DNA-binding pseudobarrel domain
SuperFamily	SSF101936	1.28E-31	86	199	IPR015300	DNA-binding pseudobarrel domain
CDD	cd10017	1.50E-29	89	190	No hit	No description
PROSITE profile	PS50863	14.522	91	201	IPR003340	B3 DNA binding domain
Pfam	PF02362	1.4E-30	91	201	IPR003340	B3 DNA binding domain
SMART	SM01019	1.7E-27	91	201	IPR003340	B3 DNA binding domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0045892	Biological Process	negative regulation of transcription, DNA-templated
GO:0080167	Biological Process	response to karrikin
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 351 aa Download sequence Send to blast
MSINHISFET VWWTKQQQYM MMDSSSPSHD NTLPQFYHHH SPTSPETQTT TMFDFNLNNM 60 SNNEEDEEQI TEDKDQNIEQ REEVIPKEHL FEKPLTPSDV GKLNRLVIPK QHAEKYFPLS 120 GNNNNNNESG TEKGLLLGFE DESGKSWRFR YSYWNSSQSY VLTKGWSRFV KEKRLDAGDI 180 VLFERHRFDG DRLFIGWRRR NTAVSASVQE SSALVVPPGM VGGDAWAQVY YGGSGGHPYP 240 GAALPYQPDC LHAGRGVLQN QTTASVNNTR RQVRLFGVNL ECEADEPSWS KPPSTPDGGG 300 SSTSSHQGQG QASQHYYQYQ FQHSKPHVAA SSYHMDMNFS RDVNQTRYHQ G

Sequence ? help Back to Top

Protein Sequence Length: 351 aa Download sequence Send to blast

MSINHISFET VWWTKQQQYM MMDSSSPSHD NTLPQFYHHH SPTSPETQTT TMFDFNLNNM  60
SNNEEDEEQI TEDKDQNIEQ REEVIPKEHL FEKPLTPSDV GKLNRLVIPK QHAEKYFPLS  120
GNNNNNNESG TEKGLLLGFE DESGKSWRFR YSYWNSSQSY VLTKGWSRFV KEKRLDAGDI  180
VLFERHRFDG DRLFIGWRRR NTAVSASVQE SSALVVPPGM VGGDAWAQVY YGGSGGHPYP  240
GAALPYQPDC LHAGRGVLQN QTTASVNNTR RQVRLFGVNL ECEADEPSWS KPPSTPDGGG  300
SSTSSHQGQG QASQHYYQYQ FQHSKPHVAA SSYHMDMNFS RDVNQTRYHQ G

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
5os9_A	4e-50	87	200	4	113	B3 domain-containing transcription factor NGA1
5os9_B	4e-50	87	200	4	113	B3 domain-containing transcription factor NGA1
Search in ModeBase

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_009600245.1	0.0	PREDICTED: B3 domain-containing protein At2g36080-like isoform X1
Swissprot	Q8GYJ2	7e-70	Y2608_ARATH; B3 domain-containing protein At2g36080
TrEMBL	A0A1S3Y9D4	0.0	A0A1S3Y9D4_TOBAC; B3 domain-containing protein At2g36080-like
STRING	XP_009600245.1	0.0	(Nicotiana tomentosiformis)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Asterids	OGEA3801	24	46

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G06250.2	3e-69	B3 family protein

Publications ? help Back to Top
Ding Y, et al. Four distinct types of dehydration stress memory genes in Arabidopsis thaliana. BMC Plant Biol., 2013. 13: p. 229 [PMID:24377444] Tanaka M, et al. The Minimum Open Reading Frame, AUG-Stop, Induces Boron-Dependent Ribosome Stalling and mRNA Degradation. Plant Cell, 2016. 28(11): p. 2830-2849 [PMID:27760805]