PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_009600232.1
Organism
Nicotiana tomentosiformis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana
Family Trihelix
Protein Properties Length: 378aa    MW: 41992.9 Da    PI: 10.4902
Description Trihelix family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_009600232.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1trihelix47.45.2e-1572159186
        trihelix   1 rWtkqevlaLiearremeerlrrgklkkplWeevskkm.rergferspk...qCkekwenlnkrykkikegekkrtsessstcpyfdqle 86 
                     +W++  + +Li+a  e+  +l+rg+lk+++W++v++ + +++ ++++pk   qCk++++ ++k+yk +k    ++  +  s++p+f++l+
  XP_009600232.1  72 CWSEGATGVLIDAWGERYLELSRGNLKQKHWKDVADIVsSREDYRKTPKtdiQCKNRIDTVKKKYKLEKSKIASG--QGPSKWPFFEKLD 159
                     7*************************************856666666644449********************98..56668******98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF138379.3E-2670161No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009793Biological Processembryo development ending in seed dormancy
GO:0010431Biological Processseed maturation
Sequence ? help Back to Top
Protein Sequence    Length: 378 aa     Download sequence    Send to blast
MEHDEETHSH QSGGSGSRSP ESPRSNGRIT VTVASAPPPQ NTLTLALPIQ QPQPLRTSGG  60
SGGGGGGGRE DCWSEGATGV LIDAWGERYL ELSRGNLKQK HWKDVADIVS SREDYRKTPK  120
TDIQCKNRID TVKKKYKLEK SKIASGQGPS KWPFFEKLDQ LIGATAKINP TIAAGGAGPS  180
NLYSRNQKLQ VPLGIPMGVR SLPHLRPHQQ PQSQQKQKQP FRKRPHVDSD TSESESEPEL  240
SPDSTDSFPP GTFQRKRPRI QRELMNSSAM RQGPRGGSGE ASGKGKNWGN SVRELTRAIL  300
KFGEAYEQAE SAKIQQMVEM EKQRMKFAKE LELQRMQFFM NTQLELSQLK QHRRIGNSNH  360
RSNNHTTTAN NHNNSDSS
Functional Description ? help Back to Top
Source Description
UniProtTranscription regulator that may repress the maturation program during early embryogenesis. {ECO:0000269|PubMed:21330492}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00356DAPTransfer from AT3G14180Download
Motif logo
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009600232.10.0PREDICTED: trihelix transcription factor ASIL2-like
SwissprotQ9LJG81e-111ASIL2_ARATH; Trihelix transcription factor ASIL2
TrEMBLA0A1S3XT010.0A0A1S3XT01_TOBAC; trihelix transcription factor ASIL2-like
STRINGXP_009600232.10.0(Nicotiana tomentosiformis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA103321823
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G14180.13e-63sequence-specific DNA binding transcription factors