PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_009600071.1
Organism
Nicotiana tomentosiformis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana
Family bHLH
Protein Properties Length: 604aa    MW: 67964.5 Da    PI: 6.2542
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_009600071.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH40.64.7e-13418461755
                     HHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
             HLH   7 erErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 
                     + ErrRR++iN++f  L ++lP+      +K++K++ L +++eY+k+L+
  XP_009600071.1 418 ISERRRREKINERFMHLASMLPTG-----GKVDKISLLDETIEYMKELE 461
                     78*********************8.....8****************996 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF142152.3E-3615168IPR025610Transcription factor MYC/MYB N-terminal
PROSITE profilePS5088815.923411460IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000834.07E-12414465No hitNo description
SuperFamilySSF474596.54E-16415472IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.102.3E-16416472IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003535.8E-16417466IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000101.3E-10418461IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009957Biological Processepidermal cell fate specification
GO:0010091Biological Processtrichome branching
GO:0005634Cellular Componentnucleus
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 604 aa     Download sequence    Send to blast
MAMGHQDQEG VPNNLRKQLA LAIRGIQWSY AIFWSTPVTK PGVLEWSDGY YNGDIKTRKT  60
VQAGEVNEDQ LGLHRTEQLR ELYSSLLTGE SEEDLQPQAK RPSAALSPED LTDTEWYFLV  120
CMSFVFNVGQ GLPGKTSATN QTIWLCNAHQ AESRVFSRSL LAKSASIQVL EDPNLIQHIK  180
NTFEVDHSVI PKRPNYVSND AKDDTNVVCR KLDRNVLESD AYPVEINNSS PHDSSNGFVA  240
NQEAEDSLMA VGIIGETSQA QSWKFVDDNM SNGVHNSLNS SDCISQNYEK LSPLSSGEKE  300
TKPCPIDRQE HNQNKLHLLD HQGDDAQYQA VISTLLKSSD QLTLGPHFRN INKKSSFAGW  360
KNDTQMQRLG TAQKLLKKVL LEVPRMHGGV THKFSRENCK KNDLWRPEVD DIDRSRVISE  420
RRRREKINER FMHLASMLPT GGKVDKISLL DETIEYMKEL ERRVQELEAR SGKKTNDTAE  480
QTSDNCGTSK FNDVKGSSLK RKACDLDEIE LESRNELLKG SSADSIVINM IDKEVSIKMR  540
CLWSEGLLLK IMEALTDLQM DCHTVQSSKI DGILSIAIES KSNGLKTVSV GAIREVLQRV  600
VWKS
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
4rqw_A7e-111614812138Transcription factor MYC3
4rqw_B7e-111614812138Transcription factor MYC3
4rs9_A7e-111614812138Transcription factor MYC3
4yz6_A7e-111614812138Transcription factor MYC3
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1419424ERRRRE
2420425RRRREK
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankKF3057680.0KF305768.1 Nicotiana tabacum cultivar SamsunNN JAF13-like protein (JAF13a) mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009600065.10.0PREDICTED: transcription factor EGL1 isoform X1
RefseqXP_009600066.10.0PREDICTED: transcription factor EGL1 isoform X1
RefseqXP_009600067.10.0PREDICTED: transcription factor EGL1 isoform X1
RefseqXP_009600068.10.0PREDICTED: transcription factor EGL1 isoform X1
RefseqXP_009600069.10.0PREDICTED: transcription factor EGL1 isoform X1
TrEMBLA0A1S3XEW80.0A0A1S3XEW8_TOBAC; transcription factor EGL1-like isoform X1
STRINGXP_009600065.10.0(Nicotiana tomentosiformis)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G41315.11e-158bHLH family protein