PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_009599949.1
Organism
Nicotiana tomentosiformis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana
Family ARR-B
Protein Properties Length: 681aa    MW: 75165.7 Da    PI: 6.6823
Description ARR-B family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_009599949.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1G2-like90.21.8e-28212265155
         G2-like   1 kprlrWtpeLHerFveaveqLGGsekAtPktilelmkvkgLtlehvkSHLQkYRl 55 
                     k+r++W+ eLH++Fv av+qL G+ekA+Pk+il+lm+v+gLt+e+v+SHLQkYRl
  XP_009599949.1 212 KARVVWSIELHRKFVAAVNQL-GIEKAVPKRILDLMNVDGLTRENVASHLQKYRL 265
                     68*******************.********************************8 PP
2Response_reg79.41.2e-26301381109
                     EEEESSSHHHHHHHHHHHHHTTCEEEEEESSHHHHHHHHHHHH..ESEEEEESSCTTSEHHHHHHHHHHHTTTSEEEEEESTTTHHHHHHHHHTT CS
    Response_reg   1 vlivdDeplvrellrqalekegyeevaeaddgeealellkekd..pDlillDiempgmdGlellkeireeepklpiivvtahgeeedalealkaG 93 
                     vl vdD+p+ ++ll  +l+k +y +v+++++++ al++l+e++  +Dl++ D+ mp+mdG++ll+     e++lp+i+++a+++ +++ + ++ G
  XP_009599949.1  30 VLAVDDDPICLKLLDGLLRKCQY-HVTTTSQARMALKMLRENRdrFDLVISDVHMPDMDGFKLLELVGL-EMDLPVIMLSANSDTKLVMKGISHG 122
                     799********************.***************999889*******************87754.558********************** PP

                     ESEEEESS--HHHHHH CS
    Response_reg  94 akdflsKpfdpeelvk 109
                     a d+l+Kp+  eel++
  XP_009599949.1 123 ACDYLVKPVRLEELRN 138
                     **************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PIRSFPIRSF0363922.3E-1618660IPR017053Response regulator B-type, plant
Gene3DG3DSA:3.40.50.23003.1E-4327162No hitNo description
SuperFamilySSF521727.12E-3627155IPR011006CheY-like superfamily
SMARTSM004487.3E-3228140IPR001789Signal transduction response regulator, receiver domain
PROSITE profilePS5011043.46229144IPR001789Signal transduction response regulator, receiver domain
PfamPF000724.4E-2430139IPR001789Signal transduction response regulator, receiver domain
CDDcd001562.80E-2831144No hitNo description
PROSITE profilePS5129413.12209268IPR017930Myb domain
Gene3DG3DSA:1.10.10.601.1E-29209270IPR009057Homeodomain-like
SuperFamilySSF466893.76E-19210269IPR009057Homeodomain-like
TIGRFAMsTIGR015571.9E-24212265IPR006447Myb domain, plants
PfamPF002494.9E-6214264IPR001005SANT/Myb domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0000160Biological Processphosphorelay signal transduction system
GO:0009414Biological Processresponse to water deprivation
GO:0010082Biological Processregulation of root meristem growth
GO:0010380Biological Processregulation of chlorophyll biosynthetic process
GO:0031537Biological Processregulation of anthocyanin metabolic process
GO:0048367Biological Processshoot system development
GO:0080022Biological Processprimary root development
GO:0080036Biological Processregulation of cytokinin-activated signaling pathway
GO:0080113Biological Processregulation of seed growth
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 681 aa     Download sequence    Send to blast
MTVEEIRGNN KGVERENYQN YDNFPIGMRV LAVDDDPICL KLLDGLLRKC QYHVTTTSQA  60
RMALKMLREN RDRFDLVISD VHMPDMDGFK LLELVGLEMD LPVIMLSANS DTKLVMKGIS  120
HGACDYLVKP VRLEELRNIW QHVIRRKKVE PKSRSKSNDH DKSYRESGEG GRGQSPTGNA  180
DPNGKLNRKR KDEEDETDEN GTDSEDTANQ KKARVVWSIE LHRKFVAAVN QLGIEKAVPK  240
RILDLMNVDG LTRENVASHL QKYRLYLKRI STVATQQANM AAALGGKDYL RMGSLDRLGD  300
FRTLAGSGRY AHPTLSSYTS GGMLGRLNSA AGLSVRNLAA TQLLQPSHGQ NLSNSVNAFA  360
KLNPNILPAS QNASLFHGIP ASLELDQLQQ SKSSAHIPLD ESRLLTADVL GYSNNSLSNA  420
PNNPMLLQGN SINMTPFSSD SFNTGVNGAS NFLDQGSCNE NWQNSVQLSK FQSSSFPLTE  480
AFLNSHLPQS SVRDDNSSAA PPHLQNSSLD FASTTTVSPS FEDSRGKIQF RDCTAGAVQS  540
MNQTPSQTWA DNKQRYSNNS NNTFGNLSSQ VPNNGGSMAS LSHCMKQSNE NFGRRMDVSL  600
IGRSNGGSSA LIQHAENEKL TPDSRTRSNE DYLLEPTKQQ VGFSPQGYDS LDDLMSAMKR  660
DQDGGMLEEE QYGFDNYPFG S
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1irz_A1e-24210271364ARR10-B
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscriptional activator that binds specific DNA sequence. Functions as a response regulator involved in His-to-Asp phosphorelay signal transduction system. Phosphorylation of the Asp residue in the receiver domain activates the ability of the protein to promote the transcription of target genes. May directly activate some type-A response regulators in response to cytokinins. {ECO:0000250|UniProtKB:Q940D0}.
UniProtTranscriptional activator that binds specific DNA sequence. Functions as a response regulator involved in His-to-Asp phosphorelay signal transduction system. Phosphorylation of the Asp residue in the receiver domain activates the ability of the protein to promote the transcription of target genes. May directly activate some type-A response regulators in response to cytokinins. {ECO:0000250|UniProtKB:Q940D0}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009599949.10.0PREDICTED: two-component response regulator ARR12-like isoform X1
RefseqXP_016501541.10.0PREDICTED: two-component response regulator ARR12-like
SwissprotA2X1N21e-136ORR24_ORYSI; Two-component response regulator ORR24
SwissprotQ6H8051e-136ORR24_ORYSJ; Two-component response regulator ORR24
TrEMBLA0A1S4CKK10.0A0A1S4CKK1_TOBAC; Two-component response regulator
STRINGXP_009599949.10.0(Nicotiana tomentosiformis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA22582458
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G25180.11e-128response regulator 12
Publications ? help Back to Top
  1. Kikuchi S, et al.
    Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice.
    Science, 2003. 301(5631): p. 376-9
    [PMID:12869764]