PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
|
Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
---|---|---|---|---|---|---|---|---|---|
TF ID | XP_009599823.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana
|
||||||||
Family | bHLH | ||||||||
Protein Properties | Length: 328aa MW: 36416.5 Da PI: 6.5334 | ||||||||
Description | bHLH family protein | ||||||||
Gene Model |
|
Signature Domain? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | HLH | 30.3 | 7.3e-10 | 241 | 284 | 7 | 55 |
HHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS HLH 7 erErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 ++ ++RR+ri +++ L+el+P+ K++ +++LekA+ Y+k Lq XP_009599823.1 241 IAAKNRRERISERLKILQELVPNG-----SKVDLVTMLEKAISYVKFLQ 284 5679*******************5.....5******************9 PP |
Protein Features ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50888 | 15.167 | 234 | 283 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Gene3D | G3DSA:4.10.280.10 | 7.9E-12 | 235 | 291 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
SuperFamily | SSF47459 | 1.23E-13 | 235 | 294 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
CDD | cd00083 | 4.39E-11 | 236 | 288 | No hit | No description |
SMART | SM00353 | 9.6E-12 | 240 | 289 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Pfam | PF00010 | 5.7E-7 | 242 | 284 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Gene Ontology ? help Back to Top | ||||||
---|---|---|---|---|---|---|
GO Term | GO Category | GO Description | ||||
GO:0048766 | Biological Process | root hair initiation | ||||
GO:0005739 | Cellular Component | mitochondrion | ||||
GO:0046983 | Molecular Function | protein dimerization activity |
Sequence ? help Back to Top |
---|
Protein Sequence Length: 328 aa Download sequence Send to blast |
MSMALAKEHI MNDTKMGLVD SYEYYEGEFG MSDHSSPELY GITEEPPKLV FEEGENPEKT 60 SPNIAKNFAI SSSSSLSSPS SSNSNGHSVI SFKGGYGNFM HSTNGSLLSF EQSERFCPNP 120 RMSSNKVECS VWEDNNLQYN NIYQNSLTPK SSSNTSPRVL INENSKNIQR ANSYGNSNAI 180 PFGWLNSEAN ATVEDLEREE SRFNKRPCME ESMQTNKKQC TGGSKKAKSN TSVATKDPQS 240 IAAKNRRERI SERLKILQEL VPNGSKVDLV TMLEKAISYV KFLQVQVKVL ATDEFWPTQG 300 GKAPDISQVK DAIDAILATQ RDRNSSSK |
Regulation -- PlantRegMap ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | ||||
Refseq | XP_009599823.1 | 0.0 | PREDICTED: transcription factor bHLH83-like | ||||
Refseq | XP_016461897.1 | 0.0 | PREDICTED: transcription factor bHLH83-like | ||||
TrEMBL | A0A1S3ZCD9 | 0.0 | A0A1S3ZCD9_TOBAC; transcription factor bHLH83-like | ||||
STRING | XP_009599823.1 | 0.0 | (Nicotiana tomentosiformis) |
Orthologous Group ? help Back to Top | |||
---|---|---|---|
Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA9986 | 21 | 26 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Hit ID | E-value | Description | ||||
AT1G66470.1 | 2e-60 | ROOT HAIR DEFECTIVE6 |