PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_009599823.1
Organism
Nicotiana tomentosiformis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana
Family bHLH
Protein Properties Length: 328aa    MW: 36416.5 Da    PI: 6.5334
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_009599823.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH30.37.3e-10241284755
                     HHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
             HLH   7 erErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 
                     ++ ++RR+ri +++  L+el+P+       K++ +++LekA+ Y+k Lq
  XP_009599823.1 241 IAAKNRRERISERLKILQELVPNG-----SKVDLVTMLEKAISYVKFLQ 284
                     5679*******************5.....5******************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5088815.167234283IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.107.9E-12235291IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474591.23E-13235294IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000834.39E-11236288No hitNo description
SMARTSM003539.6E-12240289IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000105.7E-7242284IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0048766Biological Processroot hair initiation
GO:0005739Cellular Componentmitochondrion
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 328 aa     Download sequence    Send to blast
MSMALAKEHI MNDTKMGLVD SYEYYEGEFG MSDHSSPELY GITEEPPKLV FEEGENPEKT  60
SPNIAKNFAI SSSSSLSSPS SSNSNGHSVI SFKGGYGNFM HSTNGSLLSF EQSERFCPNP  120
RMSSNKVECS VWEDNNLQYN NIYQNSLTPK SSSNTSPRVL INENSKNIQR ANSYGNSNAI  180
PFGWLNSEAN ATVEDLEREE SRFNKRPCME ESMQTNKKQC TGGSKKAKSN TSVATKDPQS  240
IAAKNRRERI SERLKILQEL VPNGSKVDLV TMLEKAISYV KFLQVQVKVL ATDEFWPTQG  300
GKAPDISQVK DAIDAILATQ RDRNSSSK
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009599823.10.0PREDICTED: transcription factor bHLH83-like
RefseqXP_016461897.10.0PREDICTED: transcription factor bHLH83-like
TrEMBLA0A1S3ZCD90.0A0A1S3ZCD9_TOBAC; transcription factor bHLH83-like
STRINGXP_009599823.10.0(Nicotiana tomentosiformis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA99862126
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G66470.12e-60ROOT HAIR DEFECTIVE6