PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Protein Features |

Gene Ontology |

Regulation |

Orthologous Group |

Basic Information? help Back to Top

TF ID

XP_009599610.1

Organism

Nicotiana tomentosiformis

Taxonomic ID

4098

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana

Family

C2H2

Protein Properties

Length: 262aa MW: 28550.7 Da PI: 8.7994

Description

C2H2 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_009599610.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-C2H2	13.5	0.00021	107	129	1	23
EEETTTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirtH 23 ykC+ C+ksF + L H +H XP_009599610.1 107 YKCSVCNKSFASYQALGGHKASH 129 9***********99998888877 PP
2	zf-C2H2	12.3	0.00053	159	181	1	23
EEETTTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirtH 23 ++C++C+k F++ L H r+H XP_009599610.1 159 HECSICHKYFPTGQALGGHKRRH 181 78*******************99 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF57667	2.92E-7	106	181	No hit	No description
PROSITE profile	PS50157	11.011	107	134	IPR007087	Zinc finger, C2H2
Pfam	PF13912	3.5E-13	107	130	IPR007087	Zinc finger, C2H2
SMART	SM00355	0.005	107	129	IPR015880	Zinc finger, C2H2-like
PROSITE pattern	PS00028	0	109	129	IPR007087	Zinc finger, C2H2
Pfam	PF13912	2.7E-11	159	183	IPR007087	Zinc finger, C2H2
SMART	SM00355	0.19	159	181	IPR015880	Zinc finger, C2H2-like
PROSITE profile	PS50157	9.556	159	186	IPR007087	Zinc finger, C2H2
PROSITE pattern	PS00028	0	161	181	IPR007087	Zinc finger, C2H2

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0046872	Molecular Function	metal ion binding

Sequence ? help Back to Top
Protein Sequence Length: 262 aa Download sequence Send to blast
MALEALKSPT TESTPTIPPI YDQVNLDSNT KRKRSKRPRN EIQPTEEEFL ALCLIMLARS 60 GGGRTNSTHH DNITSTTTAA VQQQKKQITN DPLPREDQEA LIEQHSYKCS VCNKSFASYQ 120 ALGGHKASHR NKHSTTTATT VSDDNSTSTT SLNPSGRSHE CSICHKYFPT GQALGGHKRR 180 HYEGKIIGGG GGSREAGGSH TVISSEAGGS ARTVRDFDLN LPPPPEFSLG LTVDCRGKSQ 240 LSSEREVESP MPTKKPRLYF SD

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_018625967.1	0.0	PREDICTED: zinc finger protein ZAT10-like
TrEMBL	A0A1S4A856	0.0	A0A1S4A856_TOBAC; zinc finger protein ZAT10-like
STRING	XP_009599610.1	0.0	(Nicotiana tomentosiformis)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Asterids	OGEA735	24	95

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G27730.1	4e-38	salt tolerance zinc finger