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Plant Transcription
Factor Database
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Transcription Factor Information
Basic
Information? help
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TF ID |
XP_009599252.1 |
Organism |
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Taxonomic ID |
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Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana
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Family |
SRS |
Protein Properties |
Length: 349aa MW: 37816.6 Da PI: 8.3292 |
Description |
SRS family protein |
Gene Model |
Gene Model ID |
Type |
Source |
Coding Sequence |
XP_009599252.1 | genome | NCBI | View CDS |
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Signature Domain? help Back to Top |
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No. |
Domain |
Score |
E-value |
Start |
End |
HMM Start |
HMM End |
1 | DUF702 | 226.1 | 6.6e-70 | 124 | 279 | 3 | 153 |
DUF702 3 sgtasCqdCGnqakkdCaheRCRtCCksrgfdCathvkstWvpaakrrerqqqlaaasskaaasa......aeaaskrkrelkskkqsalsstkl 91
+g+++CqdCGnqakkdC h RCRtCCksrgf+C+thvkstWvpaakrrerqq +a ++++++++ +++++ +++ +++ +s+l++++l
XP_009599252.1 124 VGGMNCQDCGNQAKKDCPHLRCRTCCKSRGFQCQTHVKSTWVPAAKRRERQQLAALNQQHNQQQQtqqlslRADSNIIPKRPRENPSSSLACSRL 218
7899**********************************************9998888777777665666664444444444467899******** PP
DUF702 92 ssaeskkeletsslPeevsseavfrcvrvssvddgeeelaYqtavsigGhvfkGiLydqGle 153
++++s e+ + +P+evss+avfrcv+vs++dd+e+++aYqtav+igGh+fkGiLydqG+e
XP_009599252.1 219 PTTSSGLEVGGH-FPAEVSSQAVFRCVKVSAIDDAEDQFAYQTAVNIGGHLFKGILYDQGPE 279
***999777765.***********************************************98 PP
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Sequence ? help Back to Top |
Protein Sequence Length: 349 aa
Download sequence Send
to blast |
MSGFFTLGGG GGGGNKEQQQ QQEQDQLATN SLLLFKNEEI YNKGFELWQQ YYQLHQQRAQ 60 TPQHQVQEMD FSVGVGPSNN RRIISGSSSS SGNNNIVGDD NNNHNYSNSF RVMRPTGGSS 120 SSGVGGMNCQ DCGNQAKKDC PHLRCRTCCK SRGFQCQTHV KSTWVPAAKR RERQQLAALN 180 QQHNQQQQTQ QLSLRADSNI IPKRPRENPS SSLACSRLPT TSSGLEVGGH FPAEVSSQAV 240 FRCVKVSAID DAEDQFAYQT AVNIGGHLFK GILYDQGPEG RYSGGGESSS GSGAAQQALN 300 FITGATTSTT AAAATSHQQQ HGTMFDPSVY PTPINAFMAG TQFFPPPRP
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Annotation --
Nucleotide ? help
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Source |
Hit ID |
E-value |
Description |
GenBank | AC006434 | 5e-45 | AC006434.5 Genomic sequence for Arabidopsis thaliana BAC F10A5, complete sequence. |
GenBank | AC023754 | 5e-45 | AC023754.3 Arabidopsis thaliana chromosome I BAC F1B16 genomic sequence, complete sequence. |
GenBank | AY800620 | 5e-45 | AY800620.1 Arabidopsis thaliana clone H0000001204 hypothetical protein (AT1G75520) mRNA, complete cds. |
GenBank | AY924730 | 5e-45 | AY924730.1 Arabidopsis thaliana hypothetical protein (At1g75520) mRNA, complete cds. |
GenBank | CP002684 | 5e-45 | CP002684.1 Arabidopsis thaliana chromosome 1 sequence. |
Best hit in Arabidopsis thaliana ? help
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Hit ID |
E-value |
Description |
AT3G51060.1 | 2e-66 | Lateral root primordium (LRP) protein-related |