 |
Plant Transcription
Factor Database
|
Transcription Factor Information
|
Basic
Information? help
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| TF ID |
XP_009598871.1 |
| Organism |
|
| Taxonomic ID |
|
| Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana
|
| Family |
MIKC_MADS |
| Protein Properties |
Length: 245aa MW: 27997.9 Da PI: 9.7207 |
| Description |
MIKC_MADS family protein |
| Gene Model |
| Gene Model ID |
Type |
Source |
Coding Sequence |
| XP_009598871.1 | genome | NCBI | View CDS |
|
| Signature Domain? help Back to Top |
 |
| No. |
Domain |
Score |
E-value |
Start |
End |
HMM Start |
HMM End |
| 1 | SRF-TF | 100.1 | 8.3e-32 | 9 | 59 | 1 | 51 |
S---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEEE- CS
SRF-TF 1 krienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyeyss 51
krienk+nrqvtf+kRrng+lKKA+ELSvLCdaeva+iifss+gklye++s
XP_009598871.1 9 KRIENKINRQVTFAKRRNGLLKKAYELSVLCDAEVALIIFSSRGKLYEFCS 59
79***********************************************96 PP
|
| 2 | K-box | 98.9 | 7.4e-33 | 81 | 174 | 7 | 100 |
K-box 7 ksleeakaeslqqelakLkkeienLqreqRhllGedLesLslkeLqqLeqqLekslkkiRskKnellleqieelqkkekelqeenkaLrkklee 100
+ ++++++s ++e+ +Lk+++e Lqr+qR+llGedL++L+ keL +Le+qLe+slk+iRs+K++ +l+q+ +lq+ke+++ e+nk+L++klee
XP_009598871.1 81 MQSATNHTQSNYHEYLRLKARVELLQRSQRNLLGEDLGTLNSKELDHLEHQLESSLKQIRSRKTQNMLDQLADLQQKEQMMAEANKQLKRKLEE 174
5567899************************************************************************************987 PP
|
| Protein Features
? help Back to Top |
 |
| Database |
Entry ID |
E-value |
Start |
End |
InterPro ID |
Description |
| SMART | SM00432 | 6.9E-42 | 1 | 60 | IPR002100 | Transcription factor, MADS-box |
| PROSITE profile | PS50066 | 33.585 | 1 | 61 | IPR002100 | Transcription factor, MADS-box |
| SuperFamily | SSF55455 | 2.62E-34 | 2 | 81 | IPR002100 | Transcription factor, MADS-box |
| CDD | cd00265 | 7.77E-46 | 2 | 79 | No hit | No description |
| PROSITE pattern | PS00350 | 0 | 3 | 57 | IPR002100 | Transcription factor, MADS-box |
| PRINTS | PR00404 | 6.5E-33 | 3 | 23 | IPR002100 | Transcription factor, MADS-box |
| Pfam | PF00319 | 1.7E-26 | 10 | 57 | IPR002100 | Transcription factor, MADS-box |
| PRINTS | PR00404 | 6.5E-33 | 23 | 38 | IPR002100 | Transcription factor, MADS-box |
| PRINTS | PR00404 | 6.5E-33 | 38 | 59 | IPR002100 | Transcription factor, MADS-box |
| Pfam | PF01486 | 1.1E-26 | 83 | 172 | IPR002487 | Transcription factor, K-box |
| PROSITE profile | PS51297 | 15.587 | 88 | 178 | IPR002487 | Transcription factor, K-box |
| Gene Ontology ? help Back to Top |
| GO Term |
GO Category |
GO Description |
| GO:0006355 | Biological Process | regulation of transcription, DNA-templated |
| GO:0005634 | Cellular Component | nucleus |
| GO:0003677 | Molecular Function | DNA binding |
| GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
| GO:0046983 | Molecular Function | protein dimerization activity |
| Sequence ? help Back to Top |
| Protein Sequence Length: 245 aa
Download sequence Send
to blast |
MGRGRVELKR IENKINRQVT FAKRRNGLLK KAYELSVLCD AEVALIIFSS RGKLYEFCST 60
SSMMQTLEKY QQCSYASLDP MQSATNHTQS NYHEYLRLKA RVELLQRSQR NLLGEDLGTL 120
NSKELDHLEH QLESSLKQIR SRKTQNMLDQ LADLQQKEQM MAEANKQLKR KLEESAARIP 180
IRLSWDNGGQ TMQHNRQLPP QTEGFFQPLG LNSSPQFGYS PMGGNEVNAA ATANNMNGFI 240
PGWML
|
| 3D Structure ? help Back to Top |
 |
| PDB ID |
Evalue |
Query Start |
Query End |
Hit Start |
Hit End |
Description |
| 4ox0_A | 1e-26 | 80 | 172 | 9 | 101 | Developmental protein SEPALLATA 3 |
| 4ox0_B | 1e-26 | 80 | 172 | 9 | 101 | Developmental protein SEPALLATA 3 |
| 4ox0_C | 1e-26 | 80 | 172 | 9 | 101 | Developmental protein SEPALLATA 3 |
| 4ox0_D | 1e-26 | 80 | 172 | 9 | 101 | Developmental protein SEPALLATA 3 |
| Search in ModeBase |
| Functional Description ? help
Back to Top |
| Source |
Description |
| UniProt | MADS-box transcription factor that acts redundantly with EJ2 to control meristem maturation and inflorescence architecture. {ECO:0000269|PubMed:28528644}. |
| Annotation --
Nucleotide ? help
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| Source |
Hit ID |
E-value |
Description |
| GenBank | AF068723 | 0.0 | AF068723.1 Nicotiana tabacum MADS-box protein MADS4 (NtMADS4) mRNA, complete cds. |
