PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | XP_009598871.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana
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Family | MIKC_MADS | ||||||||
Protein Properties | Length: 245aa MW: 27997.9 Da PI: 9.7207 | ||||||||
Description | MIKC_MADS family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | SRF-TF | 100.1 | 8.3e-32 | 9 | 59 | 1 | 51 |
S---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEEE- CS SRF-TF 1 krienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyeyss 51 krienk+nrqvtf+kRrng+lKKA+ELSvLCdaeva+iifss+gklye++s XP_009598871.1 9 KRIENKINRQVTFAKRRNGLLKKAYELSVLCDAEVALIIFSSRGKLYEFCS 59 79***********************************************96 PP | |||||||
2 | K-box | 98.9 | 7.4e-33 | 81 | 174 | 7 | 100 |
K-box 7 ksleeakaeslqqelakLkkeienLqreqRhllGedLesLslkeLqqLeqqLekslkkiRskKnellleqieelqkkekelqeenkaLrkklee 100 + ++++++s ++e+ +Lk+++e Lqr+qR+llGedL++L+ keL +Le+qLe+slk+iRs+K++ +l+q+ +lq+ke+++ e+nk+L++klee XP_009598871.1 81 MQSATNHTQSNYHEYLRLKARVELLQRSQRNLLGEDLGTLNSKELDHLEHQLESSLKQIRSRKTQNMLDQLADLQQKEQMMAEANKQLKRKLEE 174 5567899************************************************************************************987 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SMART | SM00432 | 6.9E-42 | 1 | 60 | IPR002100 | Transcription factor, MADS-box |
PROSITE profile | PS50066 | 33.585 | 1 | 61 | IPR002100 | Transcription factor, MADS-box |
SuperFamily | SSF55455 | 2.62E-34 | 2 | 81 | IPR002100 | Transcription factor, MADS-box |
CDD | cd00265 | 7.77E-46 | 2 | 79 | No hit | No description |
PROSITE pattern | PS00350 | 0 | 3 | 57 | IPR002100 | Transcription factor, MADS-box |
PRINTS | PR00404 | 6.5E-33 | 3 | 23 | IPR002100 | Transcription factor, MADS-box |
Pfam | PF00319 | 1.7E-26 | 10 | 57 | IPR002100 | Transcription factor, MADS-box |
PRINTS | PR00404 | 6.5E-33 | 23 | 38 | IPR002100 | Transcription factor, MADS-box |
PRINTS | PR00404 | 6.5E-33 | 38 | 59 | IPR002100 | Transcription factor, MADS-box |
Pfam | PF01486 | 1.1E-26 | 83 | 172 | IPR002487 | Transcription factor, K-box |
PROSITE profile | PS51297 | 15.587 | 88 | 178 | IPR002487 | Transcription factor, K-box |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding | ||||
GO:0046983 | Molecular Function | protein dimerization activity |
Sequence ? help Back to Top |
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Protein Sequence Length: 245 aa Download sequence Send to blast |
MGRGRVELKR IENKINRQVT FAKRRNGLLK KAYELSVLCD AEVALIIFSS RGKLYEFCST 60 SSMMQTLEKY QQCSYASLDP MQSATNHTQS NYHEYLRLKA RVELLQRSQR NLLGEDLGTL 120 NSKELDHLEH QLESSLKQIR SRKTQNMLDQ LADLQQKEQM MAEANKQLKR KLEESAARIP 180 IRLSWDNGGQ TMQHNRQLPP QTEGFFQPLG LNSSPQFGYS PMGGNEVNAA ATANNMNGFI 240 PGWML |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
4ox0_A | 1e-26 | 80 | 172 | 9 | 101 | Developmental protein SEPALLATA 3 |
4ox0_B | 1e-26 | 80 | 172 | 9 | 101 | Developmental protein SEPALLATA 3 |
4ox0_C | 1e-26 | 80 | 172 | 9 | 101 | Developmental protein SEPALLATA 3 |
4ox0_D | 1e-26 | 80 | 172 | 9 | 101 | Developmental protein SEPALLATA 3 |
Search in ModeBase |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | MADS-box transcription factor that acts redundantly with EJ2 to control meristem maturation and inflorescence architecture. {ECO:0000269|PubMed:28528644}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AF068723 | 0.0 | AF068723.1 Nicotiana tabacum MADS-box protein MADS4 (NtMADS4) mRNA, complete cds. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_009598871.1 | 0.0 | PREDICTED: MADS-box protein CMB1-like | ||||
Swissprot | K4DEK0 | 1e-140 | J2_SOLLC; MADS-box protein J2 | ||||
TrEMBL | A0A1S4CIP7 | 0.0 | A0A1S4CIP7_TOBAC; MADS-box protein CMB1-like | ||||
STRING | XP_009598871.1 | 0.0 | (Nicotiana tomentosiformis) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA40 | 24 | 625 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G03710.1 | 5e-95 | MIKC_MADS family protein |
Publications ? help Back to Top | |||
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