PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_009598801.1
Organism
Nicotiana tomentosiformis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana
Family ARF
Protein Properties Length: 669aa    MW: 73830.2 Da    PI: 7.0323
Description ARF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_009598801.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B3741.7e-23112212198
                     EEEE-..-HHHHTT-EE--HHH.HTT.......---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSS CS
              B3   1 ffkvltpsdvlksgrlvlpkkfaeeh.......ggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrs 88 
                     f k+lt+sd+++ g +++p+ +ae++        +++ +  t++ +d +g  W++++iyr++++r++lt+GW++Fv++++L +gD+vvF   + +
  XP_009598801.1 112 FAKTLTQSDANNGGGFSVPRYCAETIfprldftAEPPVQ--TVIAKDVHGAIWKFRHIYRGTPRRHLLTTGWSSFVNQKKLVAGDSVVFL--RAE 202
                     89*****************************87555555..8************************************************..448 PP

                     EE..EEEEE- CS
              B3  89 efelvvkvfr 98 
                     ++ l+v+++r
  XP_009598801.1 203 NGDLCVGIRR 212
                     8889****98 PP
2Auxin_resp113.42.1e-37244327183
      Auxin_resp   1 aahaastksvFevvYnPrastseFvvkvekvekalkvkvsvGmRfkmafetedsserrl.sGtvvgvsdldpvrWpnSkWrsLk 83 
                     aa  a+++++Fe+vY+Pras++eF+v++++v++a++v+++ GmRfkmafetedss++++ +G +++v+ +dp+rWp+S+Wr L+
  XP_009598801.1 244 AAYLAASGQPFEIVYYPRASSPEFCVRASSVNAAMNVQWCSGMRFKMAFETEDSSRISWfMGSISSVQVADPIRWPHSPWRFLQ 327
                     577899***************************************************************************997 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.40.330.103.2E-37105216IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019361.14E-29106214IPR015300DNA-binding pseudobarrel domain
CDDcd100171.51E-21111212No hitNo description
SMARTSM010194.1E-22112214IPR003340B3 DNA binding domain
PfamPF023621.5E-21112212IPR003340B3 DNA binding domain
PROSITE profilePS5086312.731112214IPR003340B3 DNA binding domain
PfamPF065074.7E-33244327IPR010525Auxin response factor
PROSITE profilePS5174516.078558636IPR000270PB1 domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0009725Biological Processresponse to hormone
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0005515Molecular Functionprotein binding
Sequence ? help Back to Top
Protein Sequence    Length: 669 aa     Download sequence    Send to blast
MKEAIEKCVD SQLWHACAGS MVQIPPLNSN IFYFPQGHAE HTSTDVDFTA LPRISAMILC  60
RVNAVKFLAD PETDEIYAKI MLIPVENKNH DFENDTVLGS SAVETTEKPS SFAKTLTQSD  120
ANNGGGFSVP RYCAETIFPR LDFTAEPPVQ TVIAKDVHGA IWKFRHIYRG TPRRHLLTTG  180
WSSFVNQKKL VAGDSVVFLR AENGDLCVGI RRVKRGGIGG MELNSSGGRF RDKGQVSPES  240
VVKAAYLAAS GQPFEIVYYP RASSPEFCVR ASSVNAAMNV QWCSGMRFKM AFETEDSSRI  300
SWFMGSISSV QVADPIRWPH SPWRFLQVTW DEPDLLQNVK HVSPWLVELV SNMPVIHLSH  360
FSPPRKKLCL PQDFALDSQF PLPSFLGNPL RSSSPFCCLS DNITAGIQGA RHAQFGVPLL  420
DLQLSKKIQL GLLPPVSQPL DADSRILNGI SKVQKESNEN ISCLLTMGSS SQMLDKADNL  480
KTPRFLLFGQ PILTEQQMSS GRSTNVPPQV QTKRDSSGEA QMETERISLG WKGLSESLSN  540
ATLLWNKGYH AAELGMSTGH CKVFLDSEDV GHALDISVLR SYEELYKKLA DIFGLERLDM  600
MTLVLYIDAT GASRQIGDAP FSDFVKTAKR LTILKNPDNS AARKWLTDLP TAEGCLDSSN  660
QAGSLSIFA
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
4ldu_A5e-82934851388Auxin response factor 5
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtAuxin response factors (ARFs) are transcriptional factors that bind specifically to the DNA sequence 5'-TGTCTC-3' found in the auxin-responsive promoter elements (AuxREs).
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009598798.10.0PREDICTED: auxin response factor 18-like isoform X1
RefseqXP_009598799.10.0PREDICTED: auxin response factor 18-like isoform X1
RefseqXP_009598800.10.0PREDICTED: auxin response factor 18-like isoform X1
RefseqXP_018625737.10.0PREDICTED: auxin response factor 18-like isoform X1
SwissprotQ653H70.0ARFR_ORYSJ; Auxin response factor 18
TrEMBLA0A1S4DBY90.0A0A1S4DBY9_TOBAC; Auxin response factor
STRINGXP_009598798.10.0(Nicotiana tomentosiformis)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G28350.10.0auxin response factor 10
Publications ? help Back to Top
  1. Kikuchi S, et al.
    Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice.
    Science, 2003. 301(5631): p. 376-9
    [PMID:12869764]
  2. Huang J,Li Z,Zhao D
    Deregulation of the OsmiR160 Target Gene OsARF18 Causes Growth and Developmental Defects with an Alteration of Auxin Signaling in Rice.
    Sci Rep, 2016. 6: p. 29938
    [PMID:27444058]