PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_009598796.1
Organism
Nicotiana tomentosiformis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana
Family GATA
Protein Properties Length: 264aa    MW: 29230.5 Da    PI: 8.9885
Description GATA family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_009598796.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GATA61.31.2e-19183217135
            GATA   1 CsnCgttkTplWRrgpdgnktLCnaCGlyyrkkgl 35 
                     C++C +tkTp+WR+gp g+ktLCnaCG++yr+ +l
  XP_009598796.1 183 CTHCEVTKTPQWREGPLGPKTLCNACGVRYRSGRL 217
                     *******************************9986 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM004012.7E-15177231IPR000679Zinc finger, GATA-type
PROSITE profilePS5011411.358181213IPR000679Zinc finger, GATA-type
SuperFamilySSF577161.47E-14181239No hitNo description
CDDcd002021.50E-15182229No hitNo description
Gene3DG3DSA:3.30.50.103.8E-14182214IPR013088Zinc finger, NHR/GATA-type
PROSITE patternPS003440183208IPR000679Zinc finger, GATA-type
PfamPF003201.7E-17183217IPR000679Zinc finger, GATA-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0008270Molecular Functionzinc ion binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 264 aa     Download sequence    Send to blast
MLKGLRGFCS MNINMVEQNC WDGIPMGPIV DEDFESLLNS LDFPLESLED WDPSLYQLLG  60
PIPPDALMAL PPVSRGDNAN GCLNAANEFP EAQGTVLFQT QSPISVLEHN SSCSGGKSTS  120
FKFGTKGRRS KRARASTLNP WILMACTAFA AKKTSDAKKG KEKKRRKLSQ QSSVMESILF  180
KKCTHCEVTK TPQWREGPLG PKTLCNACGV RYRSGRLLPE YRPAASPTFV PSLHSNSHMK  240
VIEMRRNAVE ESQGDLLETK RSFT
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1162166KKRRK
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009598796.10.0PREDICTED: GATA transcription factor 11-like isoform X1
RefseqXP_016510732.10.0PREDICTED: GATA transcription factor 11-like isoform X1
TrEMBLA0A1S4DBC20.0A0A1S4DBC2_TOBAC; GATA transcription factor 11-like isoform X1
STRINGXP_009598796.10.0(Nicotiana tomentosiformis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA31342149
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G08010.21e-48GATA transcription factor 11