PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_009598741.1
Organism
Nicotiana tomentosiformis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana
Family M-type_MADS
Protein Properties Length: 284aa    MW: 33165.4 Da    PI: 5.1211
Description M-type_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_009598741.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF44.61.9e-141148340
                    --SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE CS
          SRF-TF  3 ienksnrqvtfskRrngilKKAeELSvLCdaevaviif 40
                    i+++  r+ tf kR++ ++KK +ELS+LCd+++++ii+
  XP_009598741.1 11 IQDHKTRKSTFQKRKACLIKKISELSILCDIKACMIIY 48
                    889999******************************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF554556.93E-17152IPR002100Transcription factor, MADS-box
PROSITE profilePS5006617.114148IPR002100Transcription factor, MADS-box
SMARTSM004322.4E-13160IPR002100Transcription factor, MADS-box
CDDcd001203.51E-19248No hitNo description
PRINTSPR004043.1E-7323IPR002100Transcription factor, MADS-box
PfamPF003193.9E-141149IPR002100Transcription factor, MADS-box
PRINTSPR004043.1E-72338IPR002100Transcription factor, MADS-box
PRINTSPR004043.1E-73859IPR002100Transcription factor, MADS-box
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 284 aa     Download sequence    Send to blast
MGRSKINMEL IQDHKTRKST FQKRKACLIK KISELSILCD IKACMIIYEG YNCEXACMII  60
YEGNNCEEIW PNDPNEVQEL INLYKNQPIE DRSKRENSLC SFLENEKKKA EIKMAKLKTK  120
IKTEKYPTWD SRFNYLSEKE LRNLAGVLEK KMENAKGKSE FLKSSRNINQ EIWDYPELMD  180
NFNQSNPQPI SYMDNQFFQE LTADFDQVIS STDHVNSMGI LDNGQLSVGD YQFGNSDYMK  240
IEAENWLVNN GIIGSSSRMQ PMELNQYYPF ICNGSTQMPY GYFQ
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009598741.10.0PREDICTED: agamous-like MADS-box protein AGL82
TrEMBLA0A1S4B5Z10.0A0A1S4B5Z1_TOBAC; agamous-like MADS-box protein AGL82
STRINGXP_009598741.10.0(Nicotiana tomentosiformis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA63421232
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G55690.19e-18M-type_MADS family protein