PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Protein Features |

Gene Ontology |

Function |

Regulation |

Publication

Basic Information? help Back to Top

TF ID

XP_009598567.1

Organism

Nicotiana tomentosiformis

Taxonomic ID

4098

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana

Family

MYB_related

Protein Properties

Length: 321aa MW: 35678.9 Da PI: 9.9755

Description

MYB_related family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_009598567.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Myb_DNA-binding	35.3	2.7e-11	20	71	1	47
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHT.....TTS-HHHHHHHHHHH CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmg.....kgRtlkqcksrwqky 47 +++WT+eE+ l +v ++G+g W+tI + R+ ++k++w++ XP_009598567.1 20 KLKWTPEEEVALRAGVIKYGPGKWRTILKDPEfsgllYLRSNVDLKDKWRNM 71 689********************************88*********95 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF46689	4.24E-15	17	86	IPR009057	Homeodomain-like
SMART	SM00717	2.5E-6	19	74	IPR001005	SANT/Myb domain
Gene3D	G3DSA:1.10.10.60	7.9E-13	20	71	IPR009057	Homeodomain-like
Pfam	PF00249	9.7E-8	20	71	IPR001005	SANT/Myb domain
PROSITE profile	PS50090	7.387	20	72	IPR017877	Myb-like domain
CDD	cd11660	1.70E-17	22	72	No hit	No description
SMART	SM00526	4.5E-11	133	198	IPR005818	Linker histone H1/H5, domain H15
SuperFamily	SSF46785	9.25E-15	134	211	IPR011991	Winged helix-turn-helix DNA-binding domain
PROSITE profile	PS51504	20.771	135	203	IPR005818	Linker histone H1/H5, domain H15
Gene3D	G3DSA:1.10.10.10	2.0E-13	138	204	IPR011991	Winged helix-turn-helix DNA-binding domain
Pfam	PF00538	4.0E-7	140	196	IPR005818	Linker histone H1/H5, domain H15

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006334	Biological Process	nucleosome assembly
GO:0000786	Cellular Component	nucleosome
GO:0005634	Cellular Component	nucleus
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 321 aa Download sequence Send to blast
MVNGLFWELH FLNALMGAPK LKWTPEEEVA LRAGVIKYGP GKWRTILKDP EFSGLLYLRS 60 NVDLKDKWRN MTVMANGWGS REKAKLALKR MIQAPMQDES SVAVTSAAES DAEIPEARPA 120 TTSRGSPQLG GSRRSILRLD NLIMETISNL NEPGGSYQAT ISTYIEDQYW ETPNFKRILS 180 AKLKYLTATG KLIKMKRKYK VAPKLTFSNR RRNLPLPLLD SSQRICSKVD QDDINMLTRS 240 QIDLDLEKMR NMSPQEAAAA AAQAVAEADT AIADAAEAAR KAEAAAAEAE AAQAFAEAAM 300 KTLQERSIPR MRRGFDVGER T

Functional Description ? help Back to Top
Source	Description
UniProt	Binds preferentially double-stranded telomeric repeats. {ECO:0000269\|PubMed:19102728}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_009598567.2	0.0	PREDICTED: telomere repeat-binding factor 1-like isoform X2
Swissprot	Q8VWK4	1e-89	TRB1_ARATH; Telomere repeat-binding factor 1
TrEMBL	A0A1S3Z9R5	0.0	A0A1S3Z9R5_TOBAC; telomere repeat-binding factor 1-like isoform X2
STRING	XP_009598548.1	0.0	(Nicotiana tomentosiformis)

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G49950.3	7e-80	telomere repeat binding factor 1

Publications ? help Back to Top
Alexandrov NN, et al. Features of Arabidopsis genes and genome discovered using full-length cDNAs. Plant Mol. Biol., 2006. 60(1): p. 69-85 [PMID:16463100] Schrumpfová PP, et al. Telomere repeat binding proteins are functional components of Arabidopsis telomeres and interact with telomerase. Plant J., 2014. 77(5): p. 770-81 [PMID:24397874] Liang SC, et al. Kicking against the PRCs - A Domesticated Transposase Antagonises Silencing Mediated by Polycomb Group Proteins and Is an Accessory Component of Polycomb Repressive Complex 2. PLoS Genet., 2015. 11(12): p. e1005660 [PMID:26642436] Fulcher N,Riha K Using Centromere Mediated Genome Elimination to Elucidate the Functional Redundancy of Candidate Telomere Binding Proteins in Arabidopsis thaliana. Front Genet, 2015. 6: p. 349 [PMID:26779251] Kotliński M, et al. Phylogeny-Based Systematization of Arabidopsis Proteins with Histone H1 Globular Domain. Plant Physiol., 2017. 174(1): p. 27-34 [PMID:28298478]