PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | XP_009598548.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana
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Family | MYB_related | ||||||||
Protein Properties | Length: 323aa MW: 35881.4 Da PI: 9.9519 | ||||||||
Description | MYB_related family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Myb_DNA-binding | 35.3 | 2.7e-11 | 20 | 71 | 1 | 47 |
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHT.....TTS-HHHHHHHHHHH CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmg.....kgRtlkqcksrwqky 47 +++WT+eE+ l +v ++G+g W+tI + R+ ++k++w++ XP_009598548.1 20 KLKWTPEEEVALRAGVIKYGPGKWRTILKDPEfsgllYLRSNVDLKDKWRNM 71 689**********************************88***********95 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF46689 | 4.32E-15 | 17 | 86 | IPR009057 | Homeodomain-like |
SMART | SM00717 | 2.5E-6 | 19 | 74 | IPR001005 | SANT/Myb domain |
Pfam | PF00249 | 9.8E-8 | 20 | 71 | IPR001005 | SANT/Myb domain |
PROSITE profile | PS50090 | 7.387 | 20 | 72 | IPR017877 | Myb-like domain |
Gene3D | G3DSA:1.10.10.60 | 8.0E-13 | 20 | 71 | IPR009057 | Homeodomain-like |
CDD | cd11660 | 1.38E-17 | 22 | 72 | No hit | No description |
SMART | SM00526 | 4.5E-11 | 133 | 198 | IPR005818 | Linker histone H1/H5, domain H15 |
SuperFamily | SSF46785 | 9.25E-15 | 134 | 211 | IPR011991 | Winged helix-turn-helix DNA-binding domain |
PROSITE profile | PS51504 | 20.771 | 135 | 203 | IPR005818 | Linker histone H1/H5, domain H15 |
Gene3D | G3DSA:1.10.10.10 | 2.0E-13 | 138 | 204 | IPR011991 | Winged helix-turn-helix DNA-binding domain |
Pfam | PF00538 | 4.0E-7 | 140 | 196 | IPR005818 | Linker histone H1/H5, domain H15 |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006334 | Biological Process | nucleosome assembly | ||||
GO:0000786 | Cellular Component | nucleosome | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 323 aa Download sequence Send to blast |
MVNGLFWELH FLNALMGAPK LKWTPEEEVA LRAGVIKYGP GKWRTILKDP EFSGLLYLRS 60 NVDLKDKWRN MTVMANGWGS REKAKLALKR MIQAPMQDES SVAVTSAAES DAEIPEARPA 120 TTSRGSPQLG GSRRSILRLD NLIMETISNL NEPGGSYQAT ISTYIEDQYW ETPNFKRILS 180 AKLKYLTATG KLIKMKRKYK VAPKLTFSNR RRNLPLPLLD SSQRICSKVD QDDINMLTRS 240 QIDLDLEKMR NMSPQEAAAA AAQAVAEADT AIADAAEAAR KAEAAAAEAE AAQAFAEAAM 300 KTLQERSIPR MLVNMVKKFV GME |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Binds preferentially double-stranded telomeric repeats. {ECO:0000269|PubMed:19102728}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_009598548.2 | 0.0 | PREDICTED: telomere repeat-binding factor 1-like isoform X1 | ||||
Swissprot | Q8VWK4 | 3e-90 | TRB1_ARATH; Telomere repeat-binding factor 1 | ||||
TrEMBL | A0A1S3Z9M8 | 0.0 | A0A1S3Z9M8_TOBAC; telomere repeat-binding factor 1-like isoform X1 | ||||
STRING | XP_009598548.1 | 0.0 | (Nicotiana tomentosiformis) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA2864 | 24 | 48 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G49950.3 | 4e-80 | telomere repeat binding factor 1 |
Publications ? help Back to Top | |||
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