PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_009598406.1

Organism

Nicotiana tomentosiformis

Taxonomic ID

4098

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana

Family

bHLH

Protein Properties

Length: 370aa MW: 41058.4 Da PI: 4.9478

Description

bHLH family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_009598406.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	HLH	32.7	1.3e-10	295	335	10	55
HHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS HLH 10 rrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 r+RR+riN+++ L++l+P+ +K++ +++Le+Av+Y+k Lq XP_009598406.1 295 RKRRERINERLRILQSLVPNG-----TKVDISTMLEEAVQYVKFLQ 335 9****************97.....8****************9 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50888	15.428	285	334	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamily	SSF47459	3.53E-14	285	350	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
Gene3D	G3DSA:4.10.280.10	5.9E-12	290	344	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
SMART	SM00353	2.2E-11	291	340	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
CDD	cd00083	4.82E-12	294	339	No hit	No description
Pfam	PF00010	6.7E-8	295	335	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0046983	Molecular Function	protein dimerization activity

Sequence ? help Back to Top
Protein Sequence Length: 370 aa Download sequence Send to blast
MEPVGAILSE GEWSSLSGTC STEEADFMAQ LFGNCPNDQL PSSSNVRLPN FWTSHDQSTM 60 NVGGLTSQVP MYNSSDETNN SMYVFSQGSS DNSGIHFPHF HATLLTNDTS MTMEQTSVED 120 KMSYPSHQVP PPNNVIEADA IDFLNKEVCN ESMESGENRP ESDLHGKGLQ LGREYDQMQV 180 REQDHKMDSS SESSKKRSRL PAHDVPKSKR SVKPKKNMKS IADDEIGNKE NNSNVLHRQS 240 SFSCCSEDES NVSNYELYGL ASSDNSKGVS APLNSNGKSR ASRGSATDPQ SLYARKRRER 300 INERLRILQS LVPNGTKVDI STMLEEAVQY VKFLQLQIKL LSSDDLWMYS PIAYNGMDLG 360 LDLKIGTPNS

Sequence ? help Back to Top

Protein Sequence Length: 370 aa Download sequence Send to blast

MEPVGAILSE GEWSSLSGTC STEEADFMAQ LFGNCPNDQL PSSSNVRLPN FWTSHDQSTM  60
NVGGLTSQVP MYNSSDETNN SMYVFSQGSS DNSGIHFPHF HATLLTNDTS MTMEQTSVED  120
KMSYPSHQVP PPNNVIEADA IDFLNKEVCN ESMESGENRP ESDLHGKGLQ LGREYDQMQV  180
REQDHKMDSS SESSKKRSRL PAHDVPKSKR SVKPKKNMKS IADDEIGNKE NNSNVLHRQS  240
SFSCCSEDES NVSNYELYGL ASSDNSKGVS APLNSNGKSR ASRGSATDPQ SLYARKRRER  300
INERLRILQS LVPNGTKVDI STMLEEAVQY VKFLQLQIKL LSSDDLWMYS PIAYNGMDLG  360
LDLKIGTPNS

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_009598406.1	0.0	PREDICTED: transcription factor bHLH84-like
Refseq	XP_016463822.1	0.0	PREDICTED: transcription factor bHLH84-like
TrEMBL	A0A1S3ZHT6	0.0	A0A1S3ZHT6_TOBAC; transcription factor bHLH84-like
STRING	XP_009598406.1	0.0	(Nicotiana tomentosiformis)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Asterids	OGEA639	22	101

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G14760.1	2e-47	bHLH family protein