PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_009598342.1
Organism
Nicotiana tomentosiformis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana
Family ERF
Protein Properties Length: 227aa    MW: 24982.6 Da    PI: 7.8953
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_009598342.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP262.87.5e-203078355
             AP2  3 ykGVrwdkkrgrWvAeIrd.psengkrkrfslgkfgtaeeAakaaiaarkkleg 55
                    ++GVr ++ +gr++AeIrd ++    ++r++lg+f++ae+Aa+a++aa+++l+g
  XP_009598342.1 30 FRGVRKRP-WGRFAAEIRDpWK----KTRVWLGTFDSAEDAARAYDAAARALRG 78
                    8*******.**********883....5*************************99 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5103222.8532986IPR001471AP2/ERF domain
CDDcd000184.45E-172985No hitNo description
PfamPF008479.2E-132978IPR001471AP2/ERF domain
SMARTSM003803.4E-342992IPR001471AP2/ERF domain
SuperFamilySSF541719.81E-223087IPR016177DNA-binding domain
Gene3DG3DSA:3.30.730.105.1E-313086IPR001471AP2/ERF domain
PRINTSPR003672.8E-103041IPR001471AP2/ERF domain
PRINTSPR003672.8E-105268IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 227 aa     Download sequence    Send to blast
MRRGRAATAQ APAPVAGEPN GSGGSKEIRF RGVRKRPWGR FAAEIRDPWK KTRVWLGTFD  60
SAEDAARAYD AAARALRGPK AKTNFSLPYA HHHQFNQGLN PNNDPFVDSR FYPQDNPIIS  120
QRPTSSSMSS TVESFSRPRP PPAPRQQTTA SSRKYPRSPP VLPDDCHSDC DSSSSVVDDG  180
DCEKDNDNDN DNIASSSFRK PLPFDLNLLP PMDDAGTDDL HCTALCL
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5wx9_A1e-192498978Ethylene-responsive transcription factor ERF096
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor that binds to the GCC-box pathogenesis-related promoter element. Involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways. Probably acts as a transcriptional repressor and may regulate other AtERFs (By similarity). {ECO:0000250}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAB6690820.0AB669082.1 Nicotiana tabacum NtERF#205 mRNA for ethylene response factor #205, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009598342.11e-167PREDICTED: ethylene-responsive transcription factor 3
SwissprotQ9SXS81e-109ERF3_TOBAC; Ethylene-responsive transcription factor 3
TrEMBLR4WAQ61e-164R4WAQ6_TOBAC; Ethylene response factor #205
STRINGXP_009598342.11e-166(Nicotiana tomentosiformis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA33302347
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G50640.13e-27ethylene responsive element binding factor 3