PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
|
Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
---|---|---|---|---|---|---|---|---|---|
TF ID | XP_009598333.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana
|
||||||||
Family | HD-ZIP | ||||||||
Protein Properties | Length: 199aa MW: 22644.6 Da PI: 10.1945 | ||||||||
Description | HD-ZIP family protein | ||||||||
Gene Model |
|
Signature Domain? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Homeobox | 56.4 | 5.2e-18 | 106 | 158 | 2 | 54 |
T--SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHH CS Homeobox 2 rkRttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRak 54 rk+ ++tkeq +Le+ F+++++++ ++++ LA++l+L rqV vWFqNrRa+ XP_009598333.1 106 RKKLRLTKEQSAVLEDSFKEHSTLNSKQKRNLATRLSLRPRQVEVWFQNRRAR 158 788899**********************************************8 PP | |||||||
2 | HD-ZIP_I/II | 82.5 | 6.3e-27 | 106 | 164 | 1 | 59 |
HD-ZIP_I/II 1 ekkrrlskeqvklLEesFeeeekLeperKvelareLglqprqvavWFqnrRARtktkql 59 +kk+rl+keq+++LE+sF+e+++L++++K +la++L l+prqv+vWFqnrRAR+ t+++ XP_009598333.1 106 RKKLRLTKEQSAVLEDSFKEHSTLNSKQKRNLATRLSLRPRQVEVWFQNRRARITTRRI 164 69****************************************************99987 PP |
Protein Features ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:1.10.10.60 | 2.0E-17 | 94 | 156 | IPR009057 | Homeodomain-like |
PROSITE profile | PS50071 | 16.342 | 102 | 162 | IPR001356 | Homeobox domain |
SuperFamily | SSF46689 | 1.28E-16 | 103 | 159 | IPR009057 | Homeodomain-like |
SMART | SM00389 | 1.2E-13 | 104 | 166 | IPR001356 | Homeobox domain |
Pfam | PF00046 | 2.5E-15 | 106 | 158 | IPR001356 | Homeobox domain |
CDD | cd00086 | 3.05E-10 | 106 | 154 | No hit | No description |
Gene Ontology ? help Back to Top | ||||||
---|---|---|---|---|---|---|
GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
---|
Protein Sequence Length: 199 aa Download sequence Send to blast |
MICNTRLSLS LLGSSGESTT PKRKSNQDQE LDINPFPSLT LCLSSSAVNS SVISAAVSSF 60 SNSSIKRERD ASFEEEVELD TNKVIISPKL DDVDQEQDED HEFGTRKKLR LTKEQSAVLE 120 DSFKEHSTLN SKQKRNLATR LSLRPRQVEV WFQNRRARIT TRRISIWGRL TRPENQKSTT 180 SKKIGQLTLM DTKLFVPLF |
Nucleic Localization Signal ? help Back to Top | |||
---|---|---|---|
No. | Start | End | Sequence |
1 | 104 | 110 | TRKKLRL |
Regulation -- PlantRegMap ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | ||||
Refseq | XP_009598326.1 | 1e-109 | PREDICTED: homeobox-leucine zipper protein HAT22-like | ||||
TrEMBL | A0A1U7XAE2 | 2e-81 | A0A1U7XAE2_NICSY; homeobox-leucine zipper protein HAT22-like | ||||
STRING | XP_009598326.1 | 1e-109 | (Nicotiana tomentosiformis) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Hit ID | E-value | Description | ||||
AT5G06710.1 | 2e-20 | homeobox from Arabidopsis thaliana |