PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | XP_009597993.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana
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Family | NF-YB | ||||||||
Protein Properties | Length: 242aa MW: 26866.2 Da PI: 4.4163 | ||||||||
Description | NF-YB family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | NF-YB | 73.1 | 4.5e-23 | 11 | 94 | 3 | 86 |
NF-YB 3 eqdrflPianvsrimkkvlPanakiskdaketvqecvsefisfvtseasdkcqrekrktingddllwalatlGfedyveplkvy 86 ++d+ lP a +++i+k++lP + ++++da++++ ec +efi +++se+++ c+re ++ti+++ +l al lGf +y+e++ + XP_009597993.1 11 KEDASLPKATMTKIIKEMLPPDVRVARDAQDLLIECCVEFINLISSESNEVCNREGKRTIAPEHVLKALEVLGFGEYIEEVYAA 94 6899***************************************************************************98654 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:1.10.20.10 | 2.5E-38 | 8 | 138 | IPR009072 | Histone-fold |
SuperFamily | SSF47113 | 7.21E-34 | 12 | 140 | IPR009072 | Histone-fold |
Pfam | PF00808 | 1.2E-21 | 14 | 79 | IPR003958 | Transcription factor CBF/NF-Y/archaeal histone domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0046982 | Molecular Function | protein heterodimerization activity |
Sequence ? help Back to Top |
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Protein Sequence Length: 242 aa Download sequence Send to blast |
MEPMDIVGKS KEDASLPKAT MTKIIKEMLP PDVRVARDAQ DLLIECCVEF INLISSESNE 60 VCNREGKRTI APEHVLKALE VLGFGEYIEE VYAAYEQHKL ETMDTVRSGK CNNVAEMTEE 120 EALAEQQRMF AEARARMNGG VTGPPKQQDS EVGQQRMFAE ACARMNGDVT GPTKQQDSET 180 EQQRMFAEAC VRMNGDVTGL PKQQDSEAEQ QRMLAEAHAM MNGGVTGPPK EQDSEAKQNF 240 NS |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1jfi_B | 2e-33 | 12 | 134 | 12 | 133 | Transcription Regulator NC2 beta chain |
Search in ModeBase |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_009597993.1 | 1e-180 | PREDICTED: protein Dr1 homolog | ||||
Swissprot | P49592 | 4e-88 | NC2B_ARATH; Protein Dr1 homolog | ||||
TrEMBL | A0A1U7Y011 | 1e-169 | A0A1U7Y011_NICSY; protein Dr1 homolog | ||||
STRING | XP_009597993.1 | 1e-180 | (Nicotiana tomentosiformis) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA3820 | 22 | 44 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G23090.4 | 2e-92 | nuclear factor Y, subunit B13 |
Publications ? help Back to Top | |||
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