PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_009597868.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana
Family WOX
Protein Properties Length: 244aa    MW: 27564.6 Da    PI: 5.3688
Description WOX family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_009597868.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox65.38.3e-2191151257
                     T--SS--HHHHHHHHHHHHH.SSS--HHHHHHHHHHC....TS-HHHHHHHHHHHHHHHHC CS
        Homeobox   2 rkRttftkeqleeLeelFek.nrypsaeereeLAkkl....gLterqVkvWFqNrRakekk 57 
                     r+R+t+t+ ql++Le+ F + n +ps++++++++ +l    +++e++V++WFqNrRa+ k+
  XP_009597868.1  91 RQRWTPTPVQLQILERIFDQgNGTPSKQKIKDITFELsqhgQISETNVYNWFQNRRARSKR 151
                     89*****************99**************************************97 PP

2Wus_type_Homeobox100.81e-3291153365
  Wus_type_Homeobox   3 rtRWtPtpeQikiLeelyksGlrtPnkeeiqritaeLeeyGkiedkNVfyWFQNrkaRerqkq 65 
                        r+RWtPtp Q++iLe+++++G  tP+k++i++it eL+++G+i+++NV++WFQNr+aR+++kq
     XP_009597868.1  91 RQRWTPTPVQLQILERIFDQGNGTPSKQKIKDITFELSQHGQISETNVYNWFQNRRARSKRKQ 153
                        79***********************************************************97 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5007114.57687152IPR001356Homeobox domain
SMARTSM003896.6E-1489156IPR001356Homeobox domain
SuperFamilySSF466892.48E-1889154IPR009057Homeodomain-like
Gene3DG3DSA:1.10.10.601.1E-1689154IPR009057Homeodomain-like
CDDcd000862.52E-1291153No hitNo description
PfamPF000461.3E-1891151IPR001356Homeobox domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 244 aa     Download sequence    Send to blast
MEWENQQQQP PQRAEDMNGA AGGGGGMFVK VMTDEQMEVL RKQIAVYAVI CEQLVDLHKS  60
MASQHDLAGT RLGNLYCDPL ITSAGHRISG RQRWTPTPVQ LQILERIFDQ GNGTPSKQKI  120
KDITFELSQH GQISETNVYN WFQNRRARSK RKQQGGGATN NVESEVETEV ESPNEKKTKP  180
EDLQSSHMPT SRTEEGSSNP TGSFDQLSFY AMSNPRMDQV IEKMEDPGSY HPYLHAENYD  240
MISQ
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1144152RRARSKRKQ
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor which may be involved in developmental processes. {ECO:0000250}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009597868.10.0PREDICTED: WUSCHEL-related homeobox 13-like isoform X1
RefseqXP_016457345.10.0PREDICTED: WUSCHEL-related homeobox 13-like isoform X1
SwissprotQ5QMM33e-80WOX8_ORYSJ; WUSCHEL-related homeobox 8
TrEMBLA0A1S3YZ320.0A0A1S3YZ32_TOBAC; WOX13a
STRINGXP_009597868.10.0(Nicotiana tomentosiformis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA56752437
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G35550.16e-76WUSCHEL related homeobox 13
Publications ? help Back to Top
  1. Kikuchi S, et al.
    Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice.
    Science, 2003. 301(5631): p. 376-9
    [PMID:12869764]