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PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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| Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
| Basic Information? help Back to Top | |||||||||
|---|---|---|---|---|---|---|---|---|---|
| TF ID | XP_009597786.1 | ||||||||
| Organism | |||||||||
| Taxonomic ID | |||||||||
| Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana
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| Family | bHLH | ||||||||
| Protein Properties | Length: 248aa MW: 28806.7 Da PI: 6.7411 | ||||||||
| Description | bHLH family protein | ||||||||
| Gene Model |
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| Signature Domain? help Back to Top | |||||||
|---|---|---|---|---|---|---|---|
| No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
| 1 | HLH | 47.7 | 2.8e-15 | 80 | 132 | 1 | 55 |
CHHHHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
HLH 1 rrrahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55
+r ah +Er+RR+++ + ++ Lr++lP + ++K+s ++ Le+A++YI++L+
XP_009597786.1 80 KRIAHRDIERQRRQEMAHLYASLRSHLPLEF--LKGKPSASDHLEQAMNYIQHLE 132
799**************************65..9*******************96 PP
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| Protein Features ? help Back to Top | ||||||
|---|---|---|---|---|---|---|
| Database | Entry ID | E-value | Start | End | InterPro ID | Description |
| PROSITE profile | PS50888 | 13.541 | 79 | 131 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
| Gene3D | G3DSA:4.10.280.10 | 1.5E-10 | 80 | 151 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
| Pfam | PF00010 | 2.0E-12 | 80 | 132 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
| CDD | cd00083 | 1.21E-9 | 80 | 135 | No hit | No description |
| SuperFamily | SSF47459 | 3.4E-13 | 80 | 146 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
| SMART | SM00353 | 2.9E-6 | 85 | 137 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
| Gene Ontology ? help Back to Top | ||||||
|---|---|---|---|---|---|---|
| GO Term | GO Category | GO Description | ||||
| GO:0046983 | Molecular Function | protein dimerization activity | ||||
| Sequence ? help Back to Top |
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| Protein Sequence Length: 248 aa Download sequence Send to blast |
MDPLSEIFSF HEIQDYDLYH QEIQIPSTPC QIPQQDLVKV GTNSLARNDT NKKKRSRRLL 60 SSVSKDSTSN EIMDQNKLIK RIAHRDIERQ RRQEMAHLYA SLRSHLPLEF LKGKPSASDH 120 LEQAMNYIQH LENNINDFEK KRDKLNLFAH YSNREDKESI HKYNLEEHVT VNSCQDGLEI 180 LIKNKFGKEG LPLSKVLEEL MKRKLNVVTC VSTTVDETSL HKIQDTDVSC MDVSTLEEKL 240 AEMMLNLS |
| Nucleic Localization Signal ? help Back to Top | |||
|---|---|---|---|
| No. | Start | End | Sequence |
| 1 | 79 | 91 | KRIAHRDIERQRR |
| Regulation -- PlantRegMap ? help Back to Top | ||||||
|---|---|---|---|---|---|---|
| Source | Upstream Regulator | Target Gene | ||||
| PlantRegMap | Retrieve | - | ||||
| Annotation -- Protein ? help Back to Top | |||||||
|---|---|---|---|---|---|---|---|
| Source | Hit ID | E-value | Description | ||||
| Refseq | XP_009597785.1 | 0.0 | PREDICTED: transcription factor bHLH118-like | ||||
| TrEMBL | A0A1S3ZD38 | 1e-179 | A0A1S3ZD38_TOBAC; transcription factor bHLH118-like | ||||
| STRING | XP_009597785.1 | 0.0 | (Nicotiana tomentosiformis) | ||||
| Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
|---|---|---|---|---|---|---|
| Hit ID | E-value | Description | ||||
| AT4G25410.1 | 8e-34 | bHLH family protein | ||||
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for Bioinformatics, Peking University Last Modified: 2022-12-08 Questions or Comments, please contact  |
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