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PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | XP_009597666.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana
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Family | B3 | ||||||||
Protein Properties | Length: 453aa MW: 51808.5 Da PI: 8.3988 | ||||||||
Description | B3 family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | B3 | 48.2 | 1.9e-15 | 16 | 94 | 9 | 99 |
HHHHTT-EE--HHH.HTT.---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..EEEEE-S CS B3 9 dvlksgrlvlpkkfaeeh.ggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefelvvkvfrk 99 +k++ l +pk f+ ++ +g k+e + + ++W vk+ ++++ +++GW eFv++n+L+ gD++vF+++g+++f v +f++ XP_009597666.1 16 PGFKHA-LKIPKGFL-KYlNGRKHE---HAVLRRADKKWLVKV--NGYR----FEEGWAEFVEENDLQLGDMLVFRHEGNMKF--EVIIFDS 94 455555.********.554666555...56677899*******..6666....*************************99999..7777775 PP | |||||||
2 | B3 | 47.8 | 2.6e-15 | 197 | 277 | 6 | 90 |
..-HHHHTT-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE CS B3 6 tpsdvlksgrlvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsef 90 ++++ l+ g l+lp +fa+ ++ ++ +l ++de+ r W++kl+ + +++r+++++GW++F +n Lk+g+ ++F+++++ ++ XP_009597666.1 197 IRPYCLTCGYLRLPQQFANGL--SN-KKCDLFIRDERQRLWNLKLS-SDCKDRVYIGDGWRKFIADNCLKVGERIMFEVVSDGKT 277 6788889999*******9444..33.3348***************5.777788*************************8876443 PP | |||||||
3 | B3 | 58.5 | 1.2e-18 | 353 | 432 | 5 | 87 |
-..-HHHHTT-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SS CS B3 5 ltpsdvlksgrlvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgr 87 ++++++ k+ rl+l +fa+++g+ +++ +++++de+ rsW+v+l ++ ++ +t+GW +Fvkan++++gD++ F+l+++ XP_009597666.1 353 TIKPYSIKRPRLYLQADFAKSNGLMNRR-CEMIITDEKQRSWSVQL--GPTGHHVAITRGWTKFVKANDVQVGDTFKFELINN 432 568999****************887655.59***************..****9**************************9875 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:2.40.330.10 | 1.6E-22 | 4 | 97 | IPR015300 | DNA-binding pseudobarrel domain |
SuperFamily | SSF101936 | 8.04E-21 | 7 | 101 | IPR015300 | DNA-binding pseudobarrel domain |
PROSITE profile | PS50863 | 12.816 | 7 | 95 | IPR003340 | B3 DNA binding domain |
CDD | cd10017 | 3.03E-18 | 8 | 93 | No hit | No description |
SMART | SM01019 | 6.0E-15 | 10 | 95 | IPR003340 | B3 DNA binding domain |
Pfam | PF02362 | 6.1E-12 | 18 | 93 | IPR003340 | B3 DNA binding domain |
SuperFamily | SSF101936 | 1.39E-15 | 189 | 286 | IPR015300 | DNA-binding pseudobarrel domain |
Gene3D | G3DSA:2.40.330.10 | 1.1E-16 | 190 | 286 | IPR015300 | DNA-binding pseudobarrel domain |
SMART | SM01019 | 2.7E-9 | 192 | 289 | IPR003340 | B3 DNA binding domain |
PROSITE profile | PS50863 | 11.984 | 192 | 289 | IPR003340 | B3 DNA binding domain |
Pfam | PF02362 | 2.2E-13 | 196 | 278 | IPR003340 | B3 DNA binding domain |
CDD | cd10017 | 2.82E-12 | 200 | 286 | No hit | No description |
SuperFamily | SSF101936 | 2.55E-19 | 344 | 441 | IPR015300 | DNA-binding pseudobarrel domain |
Gene3D | G3DSA:2.40.330.10 | 2.9E-20 | 344 | 441 | IPR015300 | DNA-binding pseudobarrel domain |
CDD | cd10017 | 8.92E-17 | 348 | 442 | No hit | No description |
PROSITE profile | PS50863 | 13.366 | 349 | 443 | IPR003340 | B3 DNA binding domain |
SMART | SM01019 | 1.6E-14 | 350 | 447 | IPR003340 | B3 DNA binding domain |
Pfam | PF02362 | 8.6E-17 | 353 | 432 | IPR003340 | B3 DNA binding domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 453 aa Download sequence Send to blast |
MKVRPVKPHF FKPIQPGFKH ALKIPKGFLK YLNGRKHEHA VLRRADKKWL VKVNGYRFEE 60 GWAEFVEEND LQLGDMLVFR HEGNMKFEVI IFDSSHCDRE YAEYLQEEEA ATPTAHTFGE 120 TSKNFEFKDT NNYASIPSGD RLYGSLPSMS CHLSHSGNTD DVIEIPSPDI NSSDEDSSHA 180 EAATDKHVGH SHFICTIRPY CLTCGYLRLP QQFANGLSNK KCDLFIRDER QRLWNLKLSS 240 DCKDRVYIGD GWRKFIADNC LKVGERIMFE VVSDGKTEST WKFHVTDAET PKQKFQDLRA 300 NASLHPEGKK PDLDANRYST QGLRIETSDM TAPKAQVPAS TSANNAYPHF ISTIKPYSIK 360 RPRLYLQADF AKSNGLMNRR CEMIITDEKQ RSWSVQLGPT GHHVAITRGW TKFVKANDVQ 420 VGDTFKFELI NNGTIPIAYF HCKYSGKDTK QSH |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_009597666.1 | 0.0 | PREDICTED: B3 domain-containing protein REM17-like isoform X1 | ||||
Refseq | XP_016469438.1 | 0.0 | PREDICTED: B3 domain-containing protein REM17-like isoform X1 | ||||
TrEMBL | A0A1S3ZYK9 | 0.0 | A0A1S3ZYK9_TOBAC; B3 domain-containing protein REM17-like isoform X1 | ||||
STRING | XP_009597666.1 | 0.0 | (Nicotiana tomentosiformis) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA322 | 15 | 171 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G26680.1 | 6e-34 | B3 family protein |