PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_009597633.1
Organism
Nicotiana tomentosiformis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana
Family bHLH
Protein Properties Length: 508aa    MW: 55433.8 Da    PI: 5.0242
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_009597633.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH50.44e-16302348455
                     HHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
             HLH   4 ahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 
                      hn  ErrRRdriN+++  L+el+P +      K +Ka++L +A+eY+ksLq
  XP_009597633.1 302 VHNLSERRRRDRINEKMKALQELIPRC-----NKSDKASMLDEAIEYLKSLQ 348
                     6*************************8.....6******************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF474595.63E-21296364IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PROSITE profilePS5088818.146298347IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000832.44E-17301352No hitNo description
Gene3DG3DSA:4.10.280.109.2E-22302358IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000101.1E-13302348IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003533.0E-17304353IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 508 aa     Download sequence    Send to blast
MNHSVPNFEM DDDYSNIPTT FGITTPSKKS TVVDEDIMEL IWQNGQVIAQ SQNQRSQTVA  60
ASAPPLFIQE DEMATWLQYP LDDSSFERDL YADFLYNTPS SSVVTAAVPP PGEIDTTTVE  120
IRSNPPPSQL RCTEGEFSQR LQNFGHFSRL PKAKSQNCKS SSGNTARAST IVESNETPIA  180
EVSRVSDNVA PVSAGNGGGR TTTDTTTAAA ETSSGREMST AACEFMGTSS ASGARGSVSA  240
SAELQPLPPL QEAALTPAED QKRKGRESDN EERSEDAEFE SADAKKQTSS STSTKRSRAA  300
EVHNLSERRR RDRINEKMKA LQELIPRCNK SDKASMLDEA IEYLKSLQMQ VQMMSMGCSM  360
VPMIYPGVPQ YMPTMGMGMH MGMGTGMGMN RPMVPYPSLM PGPAMQNTAA AVAQMTPRFP  420
VPAYHLPPVP VPDPSRIRAA NQPDYPIMNS LVGHNTNQPR LPNLSDPYQQ YYALHQAQVL  480
PQNQRAEQPS SSNPSSRIEE SPANHQTG
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1306311ERRRRD
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009597633.10.0PREDICTED: transcription factor PIF1-like
TrEMBLA0A1S4BI580.0A0A1S4BI58_TOBAC; transcription factor PIF1-like
STRINGXP_009597633.10.0(Nicotiana tomentosiformis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA40592341
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G20180.39e-62phytochrome interacting factor 3-like 5