PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_009597610.1
Organism
Nicotiana tomentosiformis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana
Family HB-PHD
Protein Properties Length: 700aa    MW: 79157.1 Da    PI: 7.722
Description HB-PHD family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_009597610.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox42.11.5e-13480524953
                     HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHH CS
        Homeobox   9 keqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRa 53 
                     ++ +eeL ++F++n  ps+e+re L+k+lgL+ ++V  WF+N R+
  XP_009597610.1 480 PDAVEELRRAFAENELPSREMRENLSKQLGLESEKVNKWFKNARY 524
                     6889***************************************97 PP
2PHD34.83.7e-12208263151
                     SBTTTSSTCT..TSSEEEBS.SSSSEEETTTSTSSSSHHSHHSS..TBSSHHHHTT CS
             PHD   1 rCkvCgksde..egelvlCd.gCkewfHlkClglkleseekpeg..ewlCeeCkek 51 
                     +C+ C+ +++  +++++lCd +C+ +fH+kCl+++l++e++p +   w+C+ Ck+k
  XP_009597610.1 208 ICAKCKLQEAfpDNDIILCDgTCNCAFHQKCLDPPLSTENIPPDdeGWFCKFCKCK 263
                     588898844445********56*******************99999*******985 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF579033.32E-14200266IPR011011Zinc finger, FYVE/PHD-type
Gene3DG3DSA:3.30.40.102.6E-11204264IPR013083Zinc finger, RING/FYVE/PHD-type
PROSITE profilePS5001610.211206263IPR019787Zinc finger, PHD-finger
SMARTSM002492.5E-9208261IPR001965Zinc finger, PHD-type
PfamPF006283.0E-9208263IPR019787Zinc finger, PHD-finger
PROSITE patternPS013590209260IPR019786Zinc finger, PHD-type, conserved site
CDDcd155047.94E-29209260No hitNo description
Gene3DG3DSA:1.10.10.601.7E-15456523IPR009057Homeodomain-like
PROSITE profilePS5007113.524469529IPR001356Homeobox domain
SMARTSM003892.6E-12471533IPR001356Homeobox domain
SuperFamilySSF466896.42E-12472536IPR009057Homeodomain-like
CDDcd000861.44E-10472524No hitNo description
PfamPF000465.1E-11480524IPR001356Homeobox domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009733Biological Processresponse to auxin
GO:0045893Biological Processpositive regulation of transcription, DNA-templated
GO:0005515Molecular Functionprotein binding
GO:0008270Molecular Functionzinc ion binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 700 aa     Download sequence    Send to blast
MAGKTNKDMH KTVANLSQVK DALRRLDKKR SKLKSKSHGR AARASSSKRT VAGEGKRTEI  60
PQKAKSSKKQ SKLSCQGKKL QACNSKDNLK HENLDTGSEK LKKRRRKKRK HNADPDDVSR  120
LQRRTRYLLI KMKLEQNLID AYSAEGWKGQ SREKIRPERE LQRAKKQILN CKLGIREIVH  180
RLDLLSSPGQ IEDSAIAPDG SVHHEHIICA KCKLQEAFPD NDIILCDGTC NCAFHQKCLD  240
PPLSTENIPP DDEGWFCKFC KCKMEIIDAT NAHIGTHFAM DSNWEDIFKE EALLPEGGES  300
LLCAEQDWPS DDSEDDDYDP EKIAYSHSST DSFESGSSSE ASSASMLGSL EDELLALTGK  360
PEDGSSGKDY LSEQSAGLDY EETTDFEVLS GPRQRKAVDY IKLNDEMFGK HAPAIEQNSE  420
DEDWGPGKRK RRRKESESDA ASTLITLLES EKSCPEKRAD DEEKESFDKP AKRAIFRIPP  480
DAVEELRRAF AENELPSREM RENLSKQLGL ESEKVNKWFK NARYMALKAR KVESAEPCQV  540
TSPTTSEGCV SETVKDKPAD QISSRDEEEN VAHACNLERS PNEETANLMI STSKKKHGKK  600
AVKPSIDKLE TTVEFGDDVS LKLLRERAKK ERRKLNSKER ERIQEAEAEM QKLCGIKNKI  660
ARLHDVLLRL PNCRFRRADA SRVDESSVIF VPVAELQEKR
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1100109LKKRRRKKRK
2101106KKRRRK
3101108KKRRRKKR
4101109KKRRRKKRK
5103108RRRKKR
6103109RRRKKRK
7427432KRKRRR
8427433KRKRRRK
9428432RKRRR
10428434RKRRRKE
Functional Description ? help Back to Top
Source Description
UniProtSpecifically binds to the fungal elicitor-responsive DNA element, 5'-CTAATTGTTTA-3', of the gene PR2 promoter.
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: By pathogen infection.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankHG9754461e-128HG975446.1 Solanum pennellii chromosome ch07, complete genome.
GenBankHG9755191e-128HG975519.1 Solanum lycopersicum chromosome ch07, complete genome.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009597610.10.0PREDICTED: pathogenesis-related homeodomain protein isoform X2
SwissprotP487851e-150PRH_ARATH; Pathogenesis-related homeodomain protein
TrEMBLA0A1S4D2V90.0A0A1S4D2V9_TOBAC; pathogenesis-related homeodomain protein-like isoform X2
STRINGXP_009597605.10.0(Nicotiana tomentosiformis)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G29940.25e-99pathogenesis related homeodomain protein A
Publications ? help Back to Top
  1. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]