PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_009597579.1

Organism

Nicotiana tomentosiformis

Taxonomic ID

4098

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana

Family

MYB_related

Protein Properties

Length: 598aa MW: 62929.5 Da PI: 7.5693

Description

MYB_related family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_009597579.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Myb_DNA-binding	23.8	1e-07	205	249	1	44
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHT.TTS-HHHHHHHH CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmg.kgRtlkqcksrw 44 r++W++ Ed l+ av++ G g+W+ I + Rt+ q+ rw XP_009597579.1 205 RKPWSAAEDMELIAAVQKCGEGNWANILKGDFkGDRTASQLSQRW 249 789************************984222488888888888 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS51294	13.937	200	257	IPR017930	Myb domain
Gene3D	G3DSA:1.10.10.60	7.2E-13	201	252	IPR009057	Homeodomain-like
SuperFamily	SSF46689	2.08E-12	201	255	IPR009057	Homeodomain-like
SMART	SM00717	1.3E-8	204	255	IPR001005	SANT/Myb domain
Pfam	PF00249	2.1E-6	205	249	IPR001005	SANT/Myb domain
CDD	cd11660	3.31E-14	206	254	No hit	No description

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 598 aa Download sequence Send to blast
MFEKSKKQKC FVTEEDMSTL LQRYNATTVL GVLGEVAAQV AADEKIDWNA LVKKSTTGIT 60 NAREYQMLWR HLAYRHGLLD KLDDAAQPLD DDSDLEYELE AFPAVSSEAS AEAAACVKVL 120 IASGVPNDTN MLNGSTVEAP LTINIPNGQT SRTGMDNSFH GTSMHGTNIT VPVAVQKQPL 180 ATVAAAEGLD THGLACINLP PRRKRKPWSA AEDMELIAAV QKCGEGNWAN ILKGDFKGDR 240 TASQLSQRWA IIRKRQGTIV GNGSQLSEAQ LAARRAMSLA LNMPMGDNLK AACPISAGVG 300 QNSGAGPSNS SHSVAADFAS GGAQSQHQQD PLSSKPRIVP KKPLPKPNTS PDSIVKVAAV 360 AAGARVATPS NGASLLKTVQ SKSAVQIPRG GPAVKSHVPV STNGLPSNVH FICTGLVSHS 420 TGPSNASRPE TLQVLGHSLK PVSSAVQPSL AGTSSRPNAS AAPDAPTCAP AAELEENTKQ 480 KLLQKSQTTT LSNAQSEKQV GVVGASGDKA LPPQVQQDKL PASSNPFIEK AEDQTSSFGD 540 EVKEDRQDDQ DSVPGIHVQE KLINDTTNPS KALARTENGS TNGCDLNKAP TRNQNGRE

Sequence ? help Back to Top

Protein Sequence Length: 598 aa Download sequence Send to blast

MFEKSKKQKC FVTEEDMSTL LQRYNATTVL GVLGEVAAQV AADEKIDWNA LVKKSTTGIT  60
NAREYQMLWR HLAYRHGLLD KLDDAAQPLD DDSDLEYELE AFPAVSSEAS AEAAACVKVL  120
IASGVPNDTN MLNGSTVEAP LTINIPNGQT SRTGMDNSFH GTSMHGTNIT VPVAVQKQPL  180
ATVAAAEGLD THGLACINLP PRRKRKPWSA AEDMELIAAV QKCGEGNWAN ILKGDFKGDR  240
TASQLSQRWA IIRKRQGTIV GNGSQLSEAQ LAARRAMSLA LNMPMGDNLK AACPISAGVG  300
QNSGAGPSNS SHSVAADFAS GGAQSQHQQD PLSSKPRIVP KKPLPKPNTS PDSIVKVAAV  360
AAGARVATPS NGASLLKTVQ SKSAVQIPRG GPAVKSHVPV STNGLPSNVH FICTGLVSHS  420
TGPSNASRPE TLQVLGHSLK PVSSAVQPSL AGTSSRPNAS AAPDAPTCAP AAELEENTKQ  480
KLLQKSQTTT LSNAQSEKQV GVVGASGDKA LPPQVQQDKL PASSNPFIEK AEDQTSSFGD  540
EVKEDRQDDQ DSVPGIHVQE KLINDTTNPS KALARTENGS TNGCDLNKAP TRNQNGRE

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	200	206	PRRKRKP

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_009597578.1	0.0	PREDICTED: uncharacterized protein LOC104093530
TrEMBL	A0A1J6KKI0	0.0	A0A1J6KKI0_NICAT; Uncharacterized protein
STRING	XP_009597578.1	0.0	(Nicotiana tomentosiformis)

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G09710.1	8e-69	MYB_related family protein