PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Protein Features |

Gene Ontology |

Regulation |

Orthologous Group |

Basic Information? help Back to Top

TF ID

XP_009597574.1

Organism

Nicotiana tomentosiformis

Taxonomic ID

4098

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana

Family

M-type_MADS

Protein Properties

Length: 177aa MW: 20142.4 Da PI: 9.9923

Description

M-type_MADS family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_009597574.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	SRF-TF	34.4	2.8e-11	15	54	4	43
-SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TT CS SRF-TF 4 enksnrqvtfskRrngilKKAeELSvLCdaevaviifsst 43 ++k+ +v +s+ ++ + K A LS+LC++++a+iifs t XP_009597574.1 15 KDKRAEKVALSNKQKALSKRAMDLSILCGIDIAIIIFSIT 54 789999*******************************976 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SMART	SM00432	0.0012	4	63	IPR002100	Transcription factor, MADS-box
PROSITE profile	PS50066	13.778	4	64	IPR002100	Transcription factor, MADS-box
PRINTS	PR00404	1.4E-6	6	26	IPR002100	Transcription factor, MADS-box
SuperFamily	SSF55455	9.03E-15	6	77	IPR002100	Transcription factor, MADS-box
Pfam	PF00319	8.8E-10	15	60	IPR002100	Transcription factor, MADS-box
PRINTS	PR00404	1.4E-6	26	41	IPR002100	Transcription factor, MADS-box
PRINTS	PR00404	1.4E-6	41	62	IPR002100	Transcription factor, MADS-box

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003677	Molecular Function	DNA binding
GO:0046983	Molecular Function	protein dimerization activity

Sequence ? help Back to Top
Protein Sequence Length: 177 aa Download sequence Send to blast
MTSPMKNKSE KKLLKDKRAE KVALSNKQKA LSKRAMDLSI LCGIDIAIII FSITAEPFMF 60 GNPNVESVVE RFSQAKQPFY RMLSRKTTHE KAGCGDENDT MKKKKKKAIN EKEKGESTLE 120 IFKPTNLERL EKLKQEIDEL ERDLTEKIEE VRSKIGVTDP KFVPEMNATM SSAMPSN

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_009597574.1	1e-126	PREDICTED: agamous-like MADS-box protein AGL29
TrEMBL	A0A1S3X9R6	4e-99	A0A1S3X9R6_TOBAC; MADS-box transcription factor 23-like
STRING	XP_009597574.1	1e-125	(Nicotiana tomentosiformis)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Asterids	OGEA2297	12	58