PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_009597556.1
Organism
Nicotiana tomentosiformis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana
Family GRF
Protein Properties Length: 467aa    MW: 51546.3 Da    PI: 6.275
Description GRF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_009597556.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRC72.64.4e-23105147244
             WRC   2 aepgrCrRtDGKkWRCsrrvlegkklCErHlhrgrsrsrkske 44 
                      epgrC+RtDGKkWRCsr+v + +k+CErH+hrgr rsrk++e
  XP_009597556.1 105 LEPGRCKRTDGKKWRCSRDVAPHQKYCERHMHRGRPRSRKHVE 147
                     69***************************************98 PP
2QLQ522.2e-184074236
             QLQ  2 aFTaaQlqlLksQilAyKyLaanqPvPpeLlqaiq 36
                    +FT++Q+ +L++Q+++yKy+++  PvPp+Ll+ i+
  XP_009597556.1 40 PFTWSQWKELERQAMIYKYMVSAIPVPPDLLLSIC 74
                    8*******************************997 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM009519.6E-103975IPR014978Glutamine-Leucine-Glutamine, QLQ
PfamPF088802.6E-134074IPR014978Glutamine-Leucine-Glutamine, QLQ
PROSITE profilePS5166619.1474075IPR014978Glutamine-Leucine-Glutamine, QLQ
PROSITE profilePS5166724.213104148IPR014977WRC domain
PfamPF088794.2E-19106147IPR014977WRC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0010114Biological Processresponse to red light
GO:0010218Biological Processresponse to far red light
GO:0080167Biological Processresponse to karrikin
GO:0005634Cellular Componentnucleus
GO:0005524Molecular FunctionATP binding
Sequence ? help Back to Top
Protein Sequence    Length: 467 aa     Download sequence    Send to blast
MEANQRPTTG AAAVVRTFQP FDISTNSSPV EGMAAALGFP FTWSQWKELE RQAMIYKYMV  60
SAIPVPPDLL LSICTNSSGA SHTTTSAASG SGSVQGQRCR NIRDLEPGRC KRTDGKKWRC  120
SRDVAPHQKY CERHMHRGRP RSRKHVEVHA TLSNNNDNKK TRNHPVPLES TPIAVPKPPP  180
TGQTDSRSTQ PLRSAFQYME GPLFLHDKMG QNISTDSSFN ELHRSSGWTM EGELVAKAGV  240
GQQWQHLMES NIHPADWQDS YREEALNLLA CRDLERTEDV SMRHNGEFNF MINPELLSLD  300
KQSVKEAPRD LINAWSNDNI YNNSNDDNME EASLWPSQGN ISPSSLTLSM AMAAGNALDE  360
DMGLESSVMN NAYQNKSWEK FSWVPFASGG PLAEVLHPSS SINQGENPAS SYTSNCDSIS  420
PAATTVSSPS GVLQRTMFSH SDGSVCNSPI LAPPTNTSET VPFQWLS
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009597554.10.0PREDICTED: growth-regulating factor 7-like isoform X1
TrEMBLA0A1J6ISR10.0A0A1J6ISR1_NICAT; Growth-regulating factor 7
STRINGXP_009597554.10.0(Nicotiana tomentosiformis)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G53660.15e-37growth-regulating factor 7