PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_009597555.1
Organism
Nicotiana tomentosiformis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana
Family GRF
Protein Properties Length: 564aa    MW: 61835.5 Da    PI: 5.7979
Description GRF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_009597555.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRC72.35.6e-23202244244
             WRC   2 aepgrCrRtDGKkWRCsrrvlegkklCErHlhrgrsrsrkske 44 
                      epgrC+RtDGKkWRCsr+v + +k+CErH+hrgr rsrk++e
  XP_009597555.1 202 LEPGRCKRTDGKKWRCSRDVAPHQKYCERHMHRGRPRSRKHVE 244
                     69***************************************98 PP
2QLQ51.72.7e-18138172236
             QLQ   2 aFTaaQlqlLksQilAyKyLaanqPvPpeLlqaiq 36 
                     +FT++Q+ +L++Q+++yKy+++  PvPp+Ll+ i+
  XP_009597555.1 138 PFTWSQWKELERQAMIYKYMVSAIPVPPDLLLSIC 172
                     8*******************************997 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM009519.6E-10137173IPR014978Glutamine-Leucine-Glutamine, QLQ
PfamPF088803.3E-13138172IPR014978Glutamine-Leucine-Glutamine, QLQ
PROSITE profilePS5166619.147138173IPR014978Glutamine-Leucine-Glutamine, QLQ
PROSITE profilePS5166724.213201245IPR014977WRC domain
PfamPF088795.4E-19203244IPR014977WRC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0010114Biological Processresponse to red light
GO:0010218Biological Processresponse to far red light
GO:0080167Biological Processresponse to karrikin
GO:0005634Cellular Componentnucleus
GO:0005524Molecular FunctionATP binding
Sequence ? help Back to Top
Protein Sequence    Length: 564 aa     Download sequence    Send to blast
MGMEDGAING FNVSNKANLD VGKISTTTAI CYNFQLQTTE SFPSKIMMGH NQDPHRSSSD  60
EDDDGRGGDN GPTLNHSGAN KMPSSNEHNV YSDASFLLPP PPPLPATGAA AVVRTFQPFD  120
ISTNSSPVEG MAAALGFPFT WSQWKELERQ AMIYKYMVSA IPVPPDLLLS ICTNSSGASH  180
TTTSASGSGS VQGQRCRNIR DLEPGRCKRT DGKKWRCSRD VAPHQKYCER HMHRGRPRSR  240
KHVEVHATLS NNNDNKKTRN HPVPLESTPI AVPKPPPTGQ TDSRSTQPLR SAFQYMEGPL  300
FLHDKMGQNI STDSSFNELH RSSGWTMEGE LVAKAGVGQQ WQHLMESNIH PADWQDSYRE  360
EALNLLACRD LERTEDVSMR HNGEFNFMIN PELLSLDKQS VKEAPRDLIN AWSNDNIYNN  420
SNDDNMEEAS LWPSQGNISP SSLTLSMAMA AGNALDEDMG LESSVMNNAY QNKSWEKFSW  480
VPFASGGPLA EVLHPSSSIN QGENPASSYT SNCDSISPAA TTVSSPSGVL QRTMFSHSDG  540
SVCNSPILAP PTNTSETVPF QWLS
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009597555.10.0PREDICTED: growth-regulating factor 7-like isoform X2
TrEMBLA0A1J6ISR10.0A0A1J6ISR1_NICAT; Growth-regulating factor 7
STRINGXP_009597554.10.0(Nicotiana tomentosiformis)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G53660.11e-36growth-regulating factor 7