PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | XP_009597321.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana
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Family | B3 | ||||||||
Protein Properties | Length: 257aa MW: 29149.8 Da PI: 10.2862 | ||||||||
Description | B3 family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | B3 | 34.4 | 3.9e-11 | 94 | 181 | 5 | 97 |
-..-HHHHTT-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..EEEEE CS B3 5 ltpsdvlksgrlvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefelvvkvf 97 +++++ l+++ l l+ +fa+e g+ +++ t+t++de sW++kl + +++++++ W++F ang kegD +++ + ++ ++ +kv+ XP_009597321.1 94 TIKPYCLSKNFLQLSDPFAQEDGLRNRR-CTITIRDE-QMSWTFKL--YSSVSHTFIGGVWSKFYIANGFKEGDQIMLVIVA-NGNNPILKVY 181 5789999***************998765.5******5.579*****..88888899*******************9999766.5666777776 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:2.40.330.10 | 5.1E-11 | 88 | 177 | IPR015300 | DNA-binding pseudobarrel domain |
SuperFamily | SSF101936 | 5.89E-12 | 88 | 178 | IPR015300 | DNA-binding pseudobarrel domain |
CDD | cd10017 | 1.08E-9 | 89 | 182 | No hit | No description |
PROSITE profile | PS50863 | 9.065 | 90 | 186 | IPR003340 | B3 DNA binding domain |
SMART | SM01019 | 2.6E-9 | 90 | 184 | IPR003340 | B3 DNA binding domain |
Pfam | PF02362 | 1.9E-8 | 94 | 181 | IPR003340 | B3 DNA binding domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 257 aa Download sequence Send to blast |
MIYSWEIVWC SDMKETWSLK FQSLVQVNVK ENMNSLLKEL MKNKRKTIIL CKKITSQVNT 60 TEKPKLNIKS SHKAFPNVEA AQDMLLGRPH FICTIKPYCL SKNFLQLSDP FAQEDGLRNR 120 RCTITIRDEQ MSWTFKLYSS VSHTFIGGVW SKFYIANGFK EGDQIMLVIV ANGNNPILKV 180 YDLRTSASLQ REGKKPDLDT GRVSTRGFGI TGLIKTSDMP ATKAQVPSST SANANPHFIS 240 TIRPYFISRP SLVSNLN |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_018625339.1 | 1e-138 | PREDICTED: uncharacterized protein LOC104093296 isoform X1 | ||||
TrEMBL | A0A1U7W512 | 1e-105 | A0A1U7W512_NICSY; B3 domain-containing protein REM2-like isoform X1 | ||||
STRING | XP_009597321.1 | 0.0 | (Nicotiana tomentosiformis) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA322 | 15 | 171 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G31615.1 | 1e-09 | B3 family protein |