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PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | XP_009597248.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana
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Family | bHLH | ||||||||
Protein Properties | Length: 321aa MW: 36466.2 Da PI: 7.2241 | ||||||||
Description | bHLH family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | HLH | 27.2 | 7e-09 | 171 | 218 | 4 | 55 |
HHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS HLH 4 ahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 +h+ +Er RR++i +++ L++l+P + +k Ka +L + ++Y++sLq XP_009597248.1 171 SHSLAERARREKISKKMKCLQDLVPGC----NKVIGKARMLDEIINYVQSLQ 218 8*************************9....677*****************9 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
CDD | cd00083 | 2.66E-6 | 165 | 222 | No hit | No description |
SuperFamily | SSF47459 | 9.68E-16 | 165 | 230 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
PROSITE profile | PS50888 | 14.786 | 167 | 217 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Gene3D | G3DSA:4.10.280.10 | 5.1E-17 | 167 | 234 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Pfam | PF00010 | 1.9E-6 | 171 | 218 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
SMART | SM00353 | 3.4E-9 | 173 | 223 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0046983 | Molecular Function | protein dimerization activity |
Sequence ? help Back to Top |
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Protein Sequence Length: 321 aa Download sequence Send to blast |
MLGCEEISIL ERQRAIFERL YQCQQQLSSL PNQNLAHFNS LISEHIMDCS QVQNFPIKID 60 PQLDESSRSL NMFGSEQKTW AGSDFANNSL ELAHQSLSTL SNSSMTKTST KKRKAEFYEE 120 DEYKARKIEG EAGEVKSEIT VKSAKENSKI SEVKKPDYIH VRARRGQATD SHSLAERARR 180 EKISKKMKCL QDLVPGCNKV IGKARMLDEI INYVQSLQKQ VEFLSMKLSA SNLNTDNLFA 240 KEFPSHMANF ANPACLQNNL FQQQRQEGSN VGVATMSPQR REDCLMSFPE AFLDSSHVPA 300 VHQLANFETD MQCLFGVHFQ Q |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Positive regulator of brassinosteroid signaling. {ECO:0000269|PubMed:12454087}. |
Regulation -- Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | INDUCTION: Induced by flagellin, jasmonic acid (JA), brassinosteroid and cytokinin, and repressed by abscisic acid. Insensitive to gibberellic acid. {ECO:0000269|PubMed:12454087, ECO:0000269|PubMed:12679534}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | HG975442 | 2e-62 | HG975442.1 Solanum pennellii chromosome ch03, complete genome. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_009597248.1 | 0.0 | PREDICTED: transcription factor BEE 2-like isoform X2 | ||||
Swissprot | Q93VJ4 | 8e-47 | BEE2_ARATH; Transcription factor BEE 2 | ||||
TrEMBL | A0A1S4AL81 | 0.0 | A0A1S4AL81_TOBAC; transcription factor BEE 2-like | ||||
STRING | XP_009597248.1 | 0.0 | (Nicotiana tomentosiformis) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA4000 | 21 | 42 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G36540.1 | 4e-48 | BR enhanced expression 2 |
Publications ? help Back to Top | |||
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