PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_009597191.1
Organism
Nicotiana tomentosiformis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana
Family M-type_MADS
Protein Properties Length: 651aa    MW: 73550.1 Da    PI: 10.5032
Description M-type_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_009597191.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF44.22.4e-141449641
                    HHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE- CS
          SRF-TF  6 ksnrqvtfskRrngilKKAeELSvLCdaevaviifs 41
                    +  r+ ++ kR+ g++KK  ELS+LCd+e+a ii+s
  XP_009597191.1 14 DAERKASYKKRKRGLFKKVLELSTLCDVEIAAIIYS 49
                    67899******************************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5006617.03149IPR002100Transcription factor, MADS-box
SMARTSM004325.6E-19160IPR002100Transcription factor, MADS-box
CDDcd002661.60E-25285No hitNo description
PRINTSPR004041.5E-8323IPR002100Transcription factor, MADS-box
SuperFamilySSF554552.62E-22396IPR002100Transcription factor, MADS-box
PfamPF003191.6E-131150IPR002100Transcription factor, MADS-box
PRINTSPR004041.5E-82338IPR002100Transcription factor, MADS-box
PRINTSPR004041.5E-83859IPR002100Transcription factor, MADS-box
PfamPF037327.2E-9558632IPR005162Retrotransposon gag domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 651 aa     Download sequence    Send to blast
MARKKVRLAF IIRDAERKAS YKKRKRGLFK KVLELSTLCD VEIAAIIYSA FHREPEVWPS  60
HEHVMRIIER FRALPEIEQS KRQVNLEGFT RQRIKKLEDQ LRKIRKENRI KEFTNLMYDM  120
LGGQEVPQNM HPHDLNDLTY VIDQNLQKVY ERMGEEARKH GFTFNIPLTG PIDPPRGTNL  180
EEPRAPLAPP PPQFVPPVAP ISMVRPMAPS MVRPFPASSY APPLPIPPRF IPPMGLSRAL  240
SPVSPPRMFR PVGLSSWAPT PMSSQSFRPM VAPMPPVVAT RSWATRVASS PMPPAVAPRS  300
WAPRVAFPMP PTAAPRSWAP SVASPMSPAV AHRSWAPRVA TSMPLQMAPT MLPRMDFPMI  360
PAMSSPMVPS VTPPMPNSMN SSVDASMTMN DYQNYFYGNP QSPPDWEEDD LMAFVNVLAT  420
NMYTANKNNQ LNQQGGTSHT ALTRKFTRKR ITHRSTYPPP VSTTLENPCS GLDNSGNGEM  480
PNVYRVGGSD IDKYSQQPWK PSVALLPIPK KFKILDIPKY DRTSDPRDHV TAFTIGMKGN  540
DLTKQEIESI LVKKFGKTLT KGALTWYSLL PENSINSFAE LENSFKKAYS GAQKVEKRIE  600
DIFKVKQGST KLLREFVDRF QRERMMLPQV PDNWAAMAFA SNFNEKSSET R
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1224RKKVRLAFIIRDAERKASYKKRK
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_018625294.10.0PREDICTED: proline-rich protein 36-like
TrEMBLA0A1U7X6400.0A0A1U7X640_NICSY; vegetative cell wall protein gp1-like
STRINGXP_009597191.10.0(Nicotiana tomentosiformis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA13291040
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G48670.13e-36AGAMOUS-like 80