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PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | XP_009597084.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana
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Family | NAC | ||||||||
Protein Properties | Length: 460aa MW: 51892.4 Da PI: 4.3617 | ||||||||
Description | NAC family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | NAM | 63.8 | 5.1e-20 | 16 | 150 | 3 | 128 |
NAM 3 pGfrFhPtdeelvveyLkkkvegkkleleevikevdiy.kvePwdLp.kkvkaeekew.yfFskrdkkyatgkrknr.atksgyWkatgkdkevl 93 G+rF+Ptdeel+ +L k v+ k++++ ++i+ +y + +Pwd+ +++ +e++++ yfF+k ++++a g r +r + g Wk k k+v+ XP_009597084.1 16 IGIRFRPTDEELI-LFLLKFVSCKNFSC-DHIRVEALYgNKKPWDIFeNNFLGEDTKVnYFFTKLKRTKAGGLRFSRgLIGGGSWKGLDKRKPVF 108 69***********.89999*********.6777777662569****6445555555445******************999*************** PP NAM 94 skkgelvglkktLvfy........kgrapkgektdWvmheyrl 128 + +++lvg kk++ + g ++ ++ W m+ey+l XP_009597084.1 109 K-GSKLVGFKKSFRYQeedscteeLGGDRGIKNIVWNMKEYSL 150 9.9*************5554443325555556889******97 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF101941 | 9.42E-23 | 10 | 177 | IPR003441 | NAC domain |
PROSITE profile | PS51005 | 23.792 | 14 | 177 | IPR003441 | NAC domain |
Pfam | PF02365 | 6.5E-12 | 16 | 150 | IPR003441 | NAC domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 460 aa Download sequence Send to blast |
MMSSKTSHNN SPYPVIGIRF RPTDEELILF LLKFVSCKNF SCDHIRVEAL YGNKKPWDIF 60 ENNFLGEDTK VNYFFTKLKR TKAGGLRFSR GLIGGGSWKG LDKRKPVFKG SKLVGFKKSF 120 RYQEEDSCTE ELGGDRGIKN IVWNMKEYSL NDDILKVLRQ RNSIQYEDFV LCCIKRKSVH 180 VNDHKELGNM MPMEIAASGN NVVDVMNDML STAPEHDLDY VTSSSEDQGT DFHDFCPSNQ 240 FSSSEHNNVF DQLQQDQNIE QLVNVQAQNI EEMAPSAQSH VDYVGSSSSE EGTVSSNQFT 300 YSPDNNDFEL QQDHNIECDD RATVPSTLAE IMKNIDHVDR KVYEYIGSLL AEKSNTAEPQ 360 LPDESMAQGS STAMVNEENI NAGFVSDQWS IEQVHNIEER APITFTGMLS SSDYYAETST 420 TASVINSDEC FTMEELLASD DDVIAADLSW PSLEDHLQTS |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_016488024.1 | 0.0 | PREDICTED: NAC domain-containing protein 68-like | ||||
TrEMBL | A0A1S4BGP0 | 0.0 | A0A1S4BGP0_TOBAC; NAC domain-containing protein 68-like | ||||
STRING | XP_009597084.1 | 0.0 | (Nicotiana tomentosiformis) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA10426 | 6 | 25 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G04410.1 | 2e-16 | NAC domain containing protein 2 |