PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_009597063.1

Organism

Nicotiana tomentosiformis

Taxonomic ID

4098

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana

Family

CO-like

Protein Properties

Length: 390aa MW: 43151.5 Da PI: 6.3995

Description

CO-like family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_009597063.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-B_box	16.6	1.6e-05	2	42	3	37
zf-B_box 3 erkCpeHeekelqlfCedCqqllCedClleeHkg......H 37 e+ C+ ++ +++ +C+++ lC C + H+ H XP_009597063.1 2 EPLCDVCGVERAVVYCKSDAAKLCFPCDGSVHSAnclsrkH 42 689*************************9999545555555 PP
2	CCT	60.9	4.3e-21	334	377	1	44
CCT 1 ReaallRYkeKrktRkFeKkirYesRKavAesRpRvKGrFvkqa 44 R++a++RY+eK+ktR F K+irY+sRK++A++R RvKGrFvk+ XP_009597063.1 334 RNEAKMRYNEKKKTRTFRKQIRYASRKVRADTRRRVKGRFVKAG 377 99***************************************985 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50119	9.3	1	47	IPR000315	B-box-type zinc finger
SMART	SM00336	8.8E-11	1	47	IPR000315	B-box-type zinc finger
CDD	cd00021	1.57E-5	3	47	No hit	No description
PROSITE profile	PS51017	14.495	334	376	IPR010402	CCT domain
Pfam	PF06203	8.8E-16	334	376	IPR010402	CCT domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0005622	Cellular Component	intracellular
GO:0005515	Molecular Function	protein binding
GO:0008270	Molecular Function	zinc ion binding

Sequence ? help Back to Top
Protein Sequence Length: 390 aa Download sequence Send to blast
MEPLCDVCGV ERAVVYCKSD AAKLCFPCDG SVHSANCLSR KHVRSLICDN CSSEPAIVRC 60 MIIVMCLCEG CDSNTIGCNM VSRHQHQKLD SYSGCPSPAE FMTKILSTTF DQMPNNNVHN 120 VSSFDTTSSL SVNENNCSMV ASKLNELASC MKFKPWGIPS NSTYLTTYNI DQAPFFSEGS 180 SLPKQSCTTI KDHGIYGGDD LAEGVDLDEL SSDCSYNIFS SLQQSHSRYY SEDRGLDCLI 240 MEKNLSVIGP NSHVETALEA PCSVSGTANS MFMNQSCNGD TGLAFTQGPV HSRSLSISNI 300 TTESSEATDY QDCGFSPLFP PCDWNSETSC VRARNEAKMR YNEKKKTRTF RKQIRYASRK 360 VRADTRRRVK GRFVKAGEAY DFDPLVTRDM

Sequence ? help Back to Top

Protein Sequence Length: 390 aa Download sequence Send to blast

MEPLCDVCGV ERAVVYCKSD AAKLCFPCDG SVHSANCLSR KHVRSLICDN CSSEPAIVRC  60
MIIVMCLCEG CDSNTIGCNM VSRHQHQKLD SYSGCPSPAE FMTKILSTTF DQMPNNNVHN  120
VSSFDTTSSL SVNENNCSMV ASKLNELASC MKFKPWGIPS NSTYLTTYNI DQAPFFSEGS  180
SLPKQSCTTI KDHGIYGGDD LAEGVDLDEL SSDCSYNIFS SLQQSHSRYY SEDRGLDCLI  240
MEKNLSVIGP NSHVETALEA PCSVSGTANS MFMNQSCNGD TGLAFTQGPV HSRSLSISNI  300
TTESSEATDY QDCGFSPLFP PCDWNSETSC VRARNEAKMR YNEKKKTRTF RKQIRYASRK  360
VRADTRRRVK GRFVKAGEAY DFDPLVTRDM

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	HG975444	8e-32	HG975444.1 Solanum pennellii chromosome ch05, complete genome.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_009597063.1	0.0	PREDICTED: zinc finger protein CONSTANS-LIKE 12-like
TrEMBL	A0A1S3X5U5	0.0	A0A1S3X5U5_TOBAC; putative zinc finger protein CONSTANS-LIKE 11
STRING	XP_009597063.1	0.0	(Nicotiana tomentosiformis)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Asterids	OGEA4231	17	26

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G21880.1	2e-75	B-box type zinc finger protein with CCT domain