PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_009596972.1

Organism

Nicotiana tomentosiformis

Taxonomic ID

4098

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana

Family

bHLH

Protein Properties

Length: 488aa MW: 54184.3 Da PI: 6.778

Description

bHLH family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_009596972.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	HLH	26.1	1.5e-08	344	391	4	55
HHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS HLH 4 ahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 +h+ +Er RR++i +++ L++l+P + +k Ka +L + ++Y++sLq XP_009596972.1 344 SHSLAERVRREKISQRMKFLQDLVPGC----NKVTGKALMLDEIINYVQSLQ 391 8***********************9....677***************9 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
CDD	cd00083	5.33E-10	338	395	No hit	No description
SuperFamily	SSF47459	7.72E-17	338	410	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
PROSITE profile	PS50888	15.256	340	390	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
Gene3D	G3DSA:4.10.280.10	2.9E-16	340	408	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
Pfam	PF00010	1.0E-5	344	391	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
SMART	SM00353	6.8E-9	346	396	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0046983	Molecular Function	protein dimerization activity

Sequence ? help Back to Top
Protein Sequence Length: 488 aa Download sequence Send to blast
MDKDYFSNGG IPPLLQFEPR IPLNSISGQS SDCFLNTHLD NKSIDQYTNF DSALSSMVSS 60 PVASNSVNSN DNFALRELIG KLGTICSSPP PQFTDYAVNY DHINNINNSD STMTSCYSTP 120 LNSPPKLRNN IPNFDISVPV NPPQFPTVSP NPEFSHRTAK FSCFGSSSFN GRTSQFGLNN 180 TELSHRSRNE PMGSGKLSRI SSSPSLVLQN KNSGQTQVEM MCENLDLGKF SGPNNANSNE 240 ECSVSEQIPS GEIGSKTPKE LNSRKRKAVS KGKGKKYNEA EAEDGTKEKR SKSTEGNGKK 300 NGTVKMEETN GSEGDEAEKE AKEEQKPAKD WIHVRARRGQ ATDSHSLAER VRREKISQRM 360 KFLQDLVPGC NKVTGKALML DEIINYVQSL QRQVEFLSMK LASVNPRMDF HIDNFISKDI 420 CQSNGSLQQH MFPLDRSCEN LNQLHTICED ELQTIVQMGF SQNSYQDLTL QSQAFPVPNS 480 TSNMKLDM

Sequence ? help Back to Top

Protein Sequence Length: 488 aa Download sequence Send to blast

MDKDYFSNGG IPPLLQFEPR IPLNSISGQS SDCFLNTHLD NKSIDQYTNF DSALSSMVSS  60
PVASNSVNSN DNFALRELIG KLGTICSSPP PQFTDYAVNY DHINNINNSD STMTSCYSTP  120
LNSPPKLRNN IPNFDISVPV NPPQFPTVSP NPEFSHRTAK FSCFGSSSFN GRTSQFGLNN  180
TELSHRSRNE PMGSGKLSRI SSSPSLVLQN KNSGQTQVEM MCENLDLGKF SGPNNANSNE  240
ECSVSEQIPS GEIGSKTPKE LNSRKRKAVS KGKGKKYNEA EAEDGTKEKR SKSTEGNGKK  300
NGTVKMEETN GSEGDEAEKE AKEEQKPAKD WIHVRARRGQ ATDSHSLAER VRREKISQRM  360
KFLQDLVPGC NKVTGKALML DEIINYVQSL QRQVEFLSMK LASVNPRMDF HIDNFISKDI  420
CQSNGSLQQH MFPLDRSCEN LNQLHTICED ELQTIVQMGF SQNSYQDLTL QSQAFPVPNS  480
TSNMKLDM

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_009596972.1	0.0	PREDICTED: transcription factor bHLH62-like
TrEMBL	A0A1S4CYT5	0.0	A0A1S4CYT5_TOBAC; transcription factor bHLH62-like isoform X1
STRING	XP_009596972.1	0.0	(Nicotiana tomentosiformis)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Asterids	OGEA1057	23	83

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G07340.1	6e-70	bHLH family protein