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PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | XP_009596681.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana
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Family | NAC | ||||||||
Protein Properties | Length: 638aa MW: 69977 Da PI: 4.5841 | ||||||||
Description | NAC family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | NAM | 163 | 1.1e-50 | 27 | 155 | 1 | 128 |
NAM 1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLp..kkvkaeekewyfFskrdkkyatgkrknratksgyWkatgkdkevl 93 lp+G+rF+Ptdeelv++yL+ k++g + ++ vi+evdi+k+eP+dLp + v++++++w+fF++ d+ky++g+r nrat++gyWkatgkd++++ XP_009596681.1 27 LPVGYRFRPTDEELVNHYLRLKINGCDDKV-GVIREVDICKFEPSDLPdlSVVESKDNDWFFFCPIDRKYQNGQRLNRATERGYWKATGKDRNIV 120 799************************999.99**************96448888999************************************* PP NAM 94 skkgelvglkktLvfykgrapkgektdWvmheyrl 128 +kkg+++g+kktLv+y grap+g++t+Wv+heyr+ XP_009596681.1 121 TKKGAKIGMKKTLVYYIGRAPEGKRTNWVIHEYRA 155 *********************************96 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF101941 | 6.41E-57 | 23 | 178 | IPR003441 | NAC domain |
PROSITE profile | PS51005 | 53.139 | 27 | 178 | IPR003441 | NAC domain |
Pfam | PF02365 | 3.5E-26 | 28 | 154 | IPR003441 | NAC domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0009814 | Biological Process | defense response, incompatible interaction | ||||
GO:0010200 | Biological Process | response to chitin | ||||
GO:0070417 | Biological Process | cellular response to cold | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0005886 | Cellular Component | plasma membrane | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 638 aa Download sequence Send to blast |
MAVIAGDNAI AVLPGGKQLE VPPLNTLPVG YRFRPTDEEL VNHYLRLKIN GCDDKVGVIR 60 EVDICKFEPS DLPDLSVVES KDNDWFFFCP IDRKYQNGQR LNRATERGYW KATGKDRNIV 120 TKKGAKIGMK KTLVYYIGRA PEGKRTNWVI HEYRATDKSL DGSHPGQGAF VLCRLFKKNE 180 LKQDENVESS HLDEVQQLVS SPAVGKSPGN EISDAVAPSP IMESDSDKSN PPKISGGETH 240 GTRLPIDSRG DSCTVDDTED QMLDITSVPS DPELEKLLEI FCDTSPQPLD WKICSPLHAQ 300 LQVEFGSSYV HAPVINEMSH DQKDVQFQNG TNAFDINEFF NSVLDSSDEL SYEDSGLELR 360 TVQFASNTIN TITRSPFKDS GLCSESKAQV TQEPVGTDLF EPKETALMRE VNPVATTVEE 420 AFATPYVSND HSVANLDFLN NGYPGDAALS AGSGGMQVPN VLNVEDSSSY RTGSSDSGFG 480 TGIKLRTRLK QNQPDDEQFG SGMQGTSHRR IRFQVKRRAG RAECDVPTDS DMGGENPEEL 540 LTVSESEKFS IEDSSTAGAA ICGDKTQDTM CKEFKGYGRV AEDLSANAKD AYDFPVDEAS 600 KMAALSSFSS SFYISKALVA VSVIVVFLGF LGICFKLR |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1ut4_A | 1e-42 | 20 | 183 | 8 | 170 | NO APICAL MERISTEM PROTEIN |
1ut4_B | 1e-42 | 20 | 183 | 8 | 170 | NO APICAL MERISTEM PROTEIN |
1ut7_A | 1e-42 | 20 | 183 | 8 | 170 | NO APICAL MERISTEM PROTEIN |
1ut7_B | 1e-42 | 20 | 183 | 8 | 170 | NO APICAL MERISTEM PROTEIN |
3swm_A | 1e-42 | 20 | 183 | 11 | 173 | NAC domain-containing protein 19 |
3swm_B | 1e-42 | 20 | 183 | 11 | 173 | NAC domain-containing protein 19 |
3swm_C | 1e-42 | 20 | 183 | 11 | 173 | NAC domain-containing protein 19 |
3swm_D | 1e-42 | 20 | 183 | 11 | 173 | NAC domain-containing protein 19 |
3swp_A | 1e-42 | 20 | 183 | 11 | 173 | NAC domain-containing protein 19 |
3swp_B | 1e-42 | 20 | 183 | 11 | 173 | NAC domain-containing protein 19 |
3swp_C | 1e-42 | 20 | 183 | 11 | 173 | NAC domain-containing protein 19 |
3swp_D | 1e-42 | 20 | 183 | 11 | 173 | NAC domain-containing protein 19 |
4dul_A | 1e-42 | 20 | 183 | 8 | 170 | NAC domain-containing protein 19 |
4dul_B | 1e-42 | 20 | 183 | 8 | 170 | NAC domain-containing protein 19 |
Search in ModeBase |
Binding Motif ? help Back to Top | |||
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Motif ID | Method | Source | Motif file |
MP00398 | DAP | Transfer from AT3G49530 | Download |
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Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | Retrieve |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_009596681.1 | 0.0 | PREDICTED: protein NTM1-like 9 | ||||
TrEMBL | A0A1J6IB69 | 0.0 | A0A1J6IB69_NICAT; Nac domain-containing protein 62 | ||||
STRING | XP_009596681.1 | 0.0 | (Nicotiana tomentosiformis) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA3363 | 24 | 48 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G49530.1 | 9e-85 | NAC domain containing protein 62 |