PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_009596437.1
Organism
Nicotiana tomentosiformis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana
Family ERF
Protein Properties Length: 380aa    MW: 42850.5 Da    PI: 4.424
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_009596437.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP261.51.9e-19134183255
             AP2   2 gykGVrwdkkrgrWvAeIrdpsengkr.krfslgkfgtaeeAakaaiaarkkleg 55 
                     +++GVr+++ +g+W+AeIrdp     r  r +lg+++taeeAa  +++a+ kl+g
  XP_009596437.1 134 KFRGVRQRP-WGKWAAEIRDPA----RrVRLWLGTYDTAEEAAMVYDNAAIKLRG 183
                     89*******.**********82....35*************************99 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:3.30.730.101.1E-29133190IPR001471AP2/ERF domain
PROSITE profilePS5103223.657134191IPR001471AP2/ERF domain
PfamPF008471.0E-12134183IPR001471AP2/ERF domain
CDDcd000184.21E-33134190No hitNo description
SMARTSM003803.5E-39134197IPR001471AP2/ERF domain
SuperFamilySSF541712.29E-21134190IPR016177DNA-binding domain
PRINTSPR003674.4E-10135146IPR001471AP2/ERF domain
PRINTSPR003674.4E-10157173IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 380 aa     Download sequence    Send to blast
MDHDMLCPIK YTEHRNLIRK VTKPSPVKSK KFPEPQKPNQ YNRSVPPKTV RISVTDPDAT  60
DSSSDEEDEL FGRRRVKKYI NEISIETAVK CEVSMPSSGK TAVKKRAADI LQPKQKPMKV  120
KEVQPPQSAG TVRKFRGVRQ RPWGKWAAEI RDPARRVRLW LGTYDTAEEA AMVYDNAAIK  180
LRGPDALTNF ITPPKPEIDV PSNSGYESGN ESRNIPSPTS VLRFRMSQSS EETEHQSRSE  240
PVQEESPSVQ GPVECEQTVQ DVEPFGLPVR QEMEECQGET SMIPDYSNDY LPTDVSFLED  300
FFNFEAVEQT LFEDTTTGFP NDFGSSYNDT SSSDFVNDFL FNDDFGNFDD SFQDLGTLGV  360
DDYFQDIGGD FSSVDSLLAI
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1gcc_A6e-21133190159ETHYLENE RESPONSIVE ELEMENT BINDING FACTOR 1
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009596437.10.0PREDICTED: ethylene-responsive transcription factor CRF4-like
RefseqXP_016445500.10.0PREDICTED: ethylene-responsive transcription factor CRF4-like
TrEMBLA0A1S3Y0A00.0A0A1S3Y0A0_TOBAC; ethylene-responsive transcription factor CRF4-like
STRINGXP_009596437.10.0(Nicotiana tomentosiformis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA49423126
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G27950.18e-53cytokinin response factor 4