PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_009596094.1
Organism
Nicotiana tomentosiformis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana
Family M-type_MADS
Protein Properties Length: 335aa    MW: 39066.6 Da    PI: 8.3468
Description M-type_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_009596094.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF46.45.2e-151052244
                    ---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTS CS
          SRF-TF  2 rienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstg 44
                     i+n++ r+ t+ kR++ + KK +ELS+LC+++ ++i++++++
  XP_009596094.1 10 LIKNERSRNSTYQKRKKSLEKKSNELSILCQVKLCMIVYGPKD 52
                    59**************************************985 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM004324.0E-16160IPR002100Transcription factor, MADS-box
PROSITE profilePS5006616.385151IPR002100Transcription factor, MADS-box
SuperFamilySSF554555.23E-18391IPR002100Transcription factor, MADS-box
CDDcd002667.45E-20362No hitNo description
PRINTSPR004042.3E-7323IPR002100Transcription factor, MADS-box
PfamPF003194.0E-151152IPR002100Transcription factor, MADS-box
PRINTSPR004042.3E-72338IPR002100Transcription factor, MADS-box
PRINTSPR004042.3E-73859IPR002100Transcription factor, MADS-box
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 335 aa     Download sequence    Send to blast
MSRRKIGMEL IKNERSRNST YQKRKKSLEK KSNELSILCQ VKLCMIVYGP KDSEPTIWPD  60
KDTVLSLIYS YRARSDDDKR LRTHDLSFYF RDLTRKVEIE SSKLRKRNFE AKYPTWDQHY  120
DSLSSDQLKQ LSALLGAKIE FMKQRLELLK GTQTISLENM HAMSFLGKQL TQPNTQCVMQ  180
SLVRISSLQL EIIEQQHQQL VPPMNFPETE IMPFGQYHMI RQDNHQISGI STGIPHCTGT  240
GYEPHLAMLN ASGNVIESQR MCHRDLARDN NMLFSNNVDQ QPQPLCYFVP MATPNNYFHQ  300
YHPMLPNAAT SYQMHTSETE EYYEVGDFQL PNLNK
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_018625017.10.0PREDICTED: floral homeotic protein GLOBOSA-like
TrEMBLA0A1U7XMZ20.0A0A1U7XMZ2_NICSY; agamous-like MADS-box protein AGL80
STRINGXP_009596094.10.0(Nicotiana tomentosiformis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA24572253
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G28700.14e-10AGAMOUS-like 46