PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_009595585.1
Organism
Nicotiana tomentosiformis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana
Family ARR-B
Protein Properties Length: 562aa    MW: 62318.4 Da    PI: 6.5987
Description ARR-B family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_009595585.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1G2-like86.33.1e-27317370155
         G2-like   1 kprlrWtpeLHerFveaveqLGGsekAtPktilelmkvkgLtlehvkSHLQkYRl 55 
                     k +++WtpeLH++Fv+aveqL G+++A+P++ilelmkv+gLt+++v+SHLQk+R+
  XP_009595585.1 317 KMKVDWTPELHKKFVKAVEQL-GIDQAIPSRILELMKVEGLTRHNVASHLQKFRM 370
                     5689*****************.********************************8 PP
2Response_reg31.21.2e-11201261109
                     EEEESSSHHHHHHHHHHHHHTTCEEEEEESSHHHHHHHHHHHH..ESEEEEESSCTT.SEHHHHHHHHHHHTTTSEEEEEESTTTHHHHHHHHHT CS
    Response_reg   1 vlivdDeplvrellrqalekegyeevaeaddgeealellkekd..pDlillDiempg.mdGlellkeireeepklpiivvtahgeeedalealka 92 
                     vl+ d++ + ++ +r+ le+ +y +v ++ d +eal  +  k   ++l ++ +   +   Gl++l++   ++ +lp i+v++  + +++ +++ +
  XP_009595585.1  20 VLLLDKDCNSASEMRSRLEQMNY-IVYVFCDETEALSAISSKLevFHLAIVEVTAGNnDGGLKFLES---AK-DLPTIMVSSIHSISTMMKCIAL 109
                     79999******************.***************666557************5566766654...33.799******************* PP

                     TESEEEESS--HHHHHH CS
    Response_reg  93 GakdflsKpfdpeelvk 109
                     Ga +fl Kp + ++l++
  XP_009595585.1 110 GAVEFLQKPLSDDKLRN 126
                     **************987 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF521721.57E-1516134IPR011006CheY-like superfamily
Gene3DG3DSA:3.40.50.23007.3E-1516150No hitNo description
SMARTSM004483.8E-718128IPR001789Signal transduction response regulator, receiver domain
PROSITE profilePS5011021.37519132IPR001789Signal transduction response regulator, receiver domain
PfamPF000728.0E-820127IPR001789Signal transduction response regulator, receiver domain
CDDcd001561.20E-821131No hitNo description
PROSITE profilePS5129414.186314373IPR017930Myb domain
SuperFamilySSF466899.86E-18315373IPR009057Homeodomain-like
Gene3DG3DSA:1.10.10.601.4E-26315374IPR009057Homeodomain-like
TIGRFAMsTIGR015573.8E-24317371IPR006447Myb domain, plants
PfamPF002494.0E-7320368IPR001005SANT/Myb domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0000160Biological Processphosphorelay signal transduction system
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 562 aa     Download sequence    Send to blast
MVCTENELLG WNDFPKGLKV LLLDKDCNSA SEMRSRLEQM NYIVYVFCDE TEALSAISSK  60
LEVFHLAIVE VTAGNNDGGL KFLESAKDLP TIMVSSIHSI STMMKCIALG AVEFLQKPLS  120
DDKLRNIWQH VVHKAFNSGG KDISESLKPV KESLLSMLEL QPVKSEADNE NSNGAEPFTS  180
MVENQKEPPS CCDKYPAPST PQQKQGVRSV DDGDFQDHTI LSTEQDSEVN EGDTKSVETT  240
CCDSVAETTA LVDSPGRLGE AITKEEHDSA ADQKMEDHIA TCSPSNDCPG NGSTRSADPS  300
KASGLHNSRG TKANKKKMKV DWTPELHKKF VKAVEQLGID QAIPSRILEL MKVEGLTRHN  360
VASHLQKFRM QRRQILPKED EKRWPRPQPR DSVQRSYYPH KPIMAFPTYQ SNHAPAAGQF  420
YPPWVAPGSY PNGAHMWGSP YYPGWQPSQT WHWKPHPGLY ADVWGCPVTP PSFGSCPSYF  480
QNATGLHRVE GIQNRYSTLG KSVDLHPAEE VIDKVVKEAI NKPWLPLPIG LKPPSTESVL  540
DALSKQGIST VPPRINGSLR PR
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1irz_A6e-17315375363ARR10-B
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscriptional activator that binds specifically to the DNA sequence 5'-[AG]GATT-3'. {ECO:0000250}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009595585.10.0PREDICTED: two-component response regulator-like APRR2
RefseqXP_009595586.10.0PREDICTED: two-component response regulator-like APRR2
RefseqXP_009595587.10.0PREDICTED: two-component response regulator-like APRR2
RefseqXP_009595588.10.0PREDICTED: two-component response regulator-like APRR2
RefseqXP_009595589.10.0PREDICTED: two-component response regulator-like APRR2
RefseqXP_018624868.10.0PREDICTED: two-component response regulator-like APRR2
RefseqXP_018624869.10.0PREDICTED: two-component response regulator-like APRR2
SwissprotQ6LA431e-136APRR2_ARATH; Two-component response regulator-like APRR2
TrEMBLA0A1S3X7R10.0A0A1S3X7R1_TOBAC; two-component response regulator-like APRR2
STRINGXP_009595585.10.0(Nicotiana tomentosiformis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA56731531
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G18020.61e-138ARR-B family protein
Publications ? help Back to Top
  1. Gong L, et al.
    Transcriptome Profiling of the Potato (Solanum tuberosum L.) Plant under Drought Stress and Water-Stimulus Conditions.
    PLoS ONE, 2015. 10(5): p. e0128041
    [PMID:26010543]