PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Protein Features |

3D Structure |

Regulation |

Orthologous Group |

Basic Information? help Back to Top

TF ID

XP_009595583.1

Organism

Nicotiana tomentosiformis

Taxonomic ID

4098

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana

Family

CPP

Protein Properties

Length: 660aa MW: 72173.9 Da PI: 8.7286

Description

CPP family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_009595583.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	TCR	50.7	3.5e-16	269	308	1	40
TCR 1 kekkgCnCkkskClkkYCeCfaagkkCseeCkCedCkNke 40 k++kgC+Ckks ClkkYCeCf+a+ Cse+CkC dCkN e XP_009595583.1 269 KHNKGCHCKKSGCLKKYCECFQANILCSENCKCMDCKNFE 308 589***********************************65 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS51634	18.871	142	309	IPR005172	CRC domain
SMART	SM01114	8.4E-20	269	310	IPR033467	Tesmin/TSO1-like CXC domain
Pfam	PF03638	1.3E-12	272	307	IPR005172	CRC domain

Sequence ? help Back to Top
Protein Sequence Length: 660 aa Download sequence Send to blast
MEESEGGDFP PKKAQSEPAA TEASAHVVTD YPAKKLARQL DFTGFGGAAA VALPEQAKQT 60 QQQVMKSGQL SVSMKSTQMT RPQLQTQTQA LPQSQQHHIL LMPMQQTRVL PPHPSIRPVK 120 PESPKARSRQ SANEAKDGTP KKPKQCNCKH SRCLKLAIVR DLSQRINSSD SGKRNQSPEV 180 FFWRLFQGCL RLLYLCQCCA KSNTTTRVVT VRRPNPSENL RQQPPHAPPR ATRSSRADAY 240 DHFRPFFEKF PSEQLGCLEE AGDGLVLPKH NKGCHCKKSG CLKKYCECFQ ANILCSENCK 300 CMDCKNFEGS QERQALFHGD HANNMAYLQQ AANAAITGAI GSSGYGSPPV NKKRKAQELF 360 FGSMIKDPVH RLGQLQQESQ IKASVPPSPL SSIPGPRVGN AAALGPSKFT YRSLLADLIH 420 PHDIKELCSV LVDYAWEAGR MLADERDASL KQAKCHSEAS YPSSGIEKVI PDDCSNAVRA 480 ENMDESSFDS ANVPKERPMS PGTLALMCDE QNTIFTAAAA PPNDPTSLSN NTSSQLPHGQ 540 GMKEVYPELE KIVLTRTRDC LKKLITLGEL KETKCSSMVR GADSGSQNEV NGNGIAMTDS 600 RNQHEPFRNG VANTVPTPPP PPPPPQKVEP GTTAFNNNPC PKVHPPDGNG DVKSKICNKL

Sequence ? help Back to Top

Protein Sequence Length: 660 aa Download sequence Send to blast

MEESEGGDFP PKKAQSEPAA TEASAHVVTD YPAKKLARQL DFTGFGGAAA VALPEQAKQT  60
QQQVMKSGQL SVSMKSTQMT RPQLQTQTQA LPQSQQHHIL LMPMQQTRVL PPHPSIRPVK  120
PESPKARSRQ SANEAKDGTP KKPKQCNCKH SRCLKLAIVR DLSQRINSSD SGKRNQSPEV  180
FFWRLFQGCL RLLYLCQCCA KSNTTTRVVT VRRPNPSENL RQQPPHAPPR ATRSSRADAY  240
DHFRPFFEKF PSEQLGCLEE AGDGLVLPKH NKGCHCKKSG CLKKYCECFQ ANILCSENCK  300
CMDCKNFEGS QERQALFHGD HANNMAYLQQ AANAAITGAI GSSGYGSPPV NKKRKAQELF  360
FGSMIKDPVH RLGQLQQESQ IKASVPPSPL SSIPGPRVGN AAALGPSKFT YRSLLADLIH  420
PHDIKELCSV LVDYAWEAGR MLADERDASL KQAKCHSEAS YPSSGIEKVI PDDCSNAVRA  480
ENMDESSFDS ANVPKERPMS PGTLALMCDE QNTIFTAAAA PPNDPTSLSN NTSSQLPHGQ  540
GMKEVYPELE KIVLTRTRDC LKKLITLGEL KETKCSSMVR GADSGSQNEV NGNGIAMTDS  600
RNQHEPFRNG VANTVPTPPP PPPPPQKVEP GTTAFNNNPC PKVHPPDGNG DVKSKICNKL

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
5fd3_A	7e-15	269	318	83	132	Protein lin-54 homolog
5fd3_B	7e-15	269	318	83	132	Protein lin-54 homolog
Search in ModeBase

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_009595592.1	0.0	PREDICTED: protein tesmin/TSO1-like CXC 5 isoform X1
TrEMBL	A0A1U7VWI3	0.0	A0A1U7VWI3_NICSY; protein tesmin/TSO1-like CXC 5 isoform X1
STRING	XP_009595583.1	0.0	(Nicotiana tomentosiformis)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Asterids	OGEA2401	24	55

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G29000.1	1e-125	Tesmin/TSO1-like CXC domain-containing protein